RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ANKRD12Q6UB98 2062 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV1-46P01743 117 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 C1orf64Q8NEQ6 169 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 MGAMO43451 1857 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 IGLV1-47P01700 117 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 C11orf72Q8NBR9 251 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 FAM229BQ4G0N7 80 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 Q5VV11 94 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 SCXQ7RTU7 201 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 OCR1Q9BZK8 76 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 MINOS1-NBL1R4GNA1 71 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 APELAP0DMC3 54 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 HIGD2AQ9BW72 106 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 NUP205Q92621 2012 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3-49A0A0A0MS15 119 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 C16orf90A8MZG2 172 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 RNASE1P07998 156 aaKnown RBP2.93□□□□□ -1.94
NEDD4-201ENST00000338963 CNEP1R1Q8N9A8 125 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 CHCHD7Q9BUK0 85 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 NUP210Q8TEM1 1887 aaPredicted RBP2.93□□□□□ -1.94
NEDD4-201ENST00000338963 TRPM6Q9BX84 2022 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 TRGV2A0A075B6R0 118 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 LCE6AA0A183 80 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 SPATA3Q8NHX4 192 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3OR16-9A0A0B4J2B5 98 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV4-38-2P0DP08 117 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 LINC00242Q5T6M2 205 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 H0Y9J4 135 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 RETNLBQ9BQ08 111 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 WFDC10AQ9H1F0 79 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 COX17Q14061 63 aa2.93□□□□□ -1.94
NEDD4-201ENST00000338963 BBC3Q96PG8 261 aaPredicted RBP2.93□□□□□ -1.94
NEDD4-201ENST00000338963 MCM3APO60318 1980 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV4-31P0DP07 118 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 COX7A1P24310 79 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 WDR81Q562E7 1941 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 PRR9Q5T870 116 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 LINC00575Q6W349 94 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 ZNF580Q9UK33 172 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 PLXNB3Q9ULL4 1909 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 DEFB103AP81534 67 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 CACNA1IQ9P0X4 2223 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 CKAP5Q14008 2032 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 SLPIP03973 132 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 USMG5Q96IX5 58 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 LINC00467Q9BRT7 94 aa2.92□□□□□ -1.94
NEDD4-201ENST00000338963 HELZP42694 1942 aaKnown RBP2.92□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV7-81A0A0B4J1V7 117 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 CDC42SE2Q9NRR3 84 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3-35A0A0C4DH35 117 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 C3orf84H3BNL1 204 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 HIGD2BQ4VC39 106 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 TOMM7Q9P0U1 55 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3-53P01767 116 aa2.91□□□□□ -1.94
NEDD4-201ENST00000338963 Q8N9P0 234 aaPredicted RBP2.91□□□□□ -1.94
NEDD4-201ENST00000338963 PINLYPA6NC86 204 aa2.9□□□□□ -1.94
NEDD4-201ENST00000338963 LINC00313P59037 77 aa2.9□□□□□ -1.94
NEDD4-201ENST00000338963 BSPH1Q075Z2 132 aa2.9□□□□□ -1.94
NEDD4-201ENST00000338963 DOCK6Q96HP0 2047 aa2.9□□□□□ -1.94
NEDD4-201ENST00000338963 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.9□□□□□ -1.94
NEDD4-201ENST00000338963 LINC01558Q9Y6Z2 57 aa2.9□□□□□ -1.94
NEDD4-201ENST00000338963 PTPRDP23468 1912 aa2.9□□□□□ -1.94
NEDD4-201ENST00000338963 MDC1Q14676 2089 aaKnown RBP2.9□□□□□ -1.95
NEDD4-201ENST00000338963 IGKV2-28A0A075B6P5 120 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 K7EQG2 157 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 IGKV2D-28P01615 120 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 SPAG11BQ08648 103 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 Q8NA96 180 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 EVPLQ92817 2033 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 FBXL19-AS1Q494R0 122 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 PRSS33Q8NF86 280 aa2.9□□□□□ -1.95
NEDD4-201ENST00000338963 ZCCHC13Q8WW36 166 aaKnown RBP2.89□□□□□ -1.95
NEDD4-201ENST00000338963 S4R3C0 116 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 CLPSL1A2RUU4 121 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 IGKV4-1P06312 121 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 RNASE13Q5GAN3 156 aaKnown RBP2.89□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3-23P01764 117 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 ZNRD1Q9P1U0 126 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 OBSL1O75147 1896 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3OR16-12A0A075B7B8 117 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 F8W735 103 aaPredicted RBP2.89□□□□□ -1.95
NEDD4-201ENST00000338963 SPINK14Q6IE38 97 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 C6orf99Q4VX62 202 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 NOTCH2NLQ7Z3S9 236 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 RHPN1-AS1Q9BWJ2 59 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 PIKFYVEQ9Y2I7 2098 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3-73A0A0B4J1V6 119 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 XAGE1AQ9HD64 81 aa2.89□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3-66A0A0C4DH42 116 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 PLA2G1BP04054 148 aaKnown RBP2.88□□□□□ -1.95
NEDD4-201ENST00000338963 Q8IZM0 81 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 NUP214P35658 2090 aaPredicted RBP2.88□□□□□ -1.95
NEDD4-201ENST00000338963 MDFIQ99750 246 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 X6R8D5 127 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 C9orf129Q5T035 196 aaKnown RBP2.88□□□□□ -1.95
NEDD4-201ENST00000338963 FDCSPQ8NFU4 85 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 KMT2EQ8IZD2 1858 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 TTC3P53804 2025 aa2.88□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3OR16-13A0A075B7E8 117 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3-74A0A0B4J1X5 117 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms