RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 APRG1Q8IVJ8 170 aa12.21□□□□□ -0.46
NPHP3-201ENST00000337331 RNF152Q8N8N0 203 aa12.21□□□□□ -0.46
NPHP3-201ENST00000337331 DSCR8Q96T75 97 aa12.2□□□□□ -0.46
NPHP3-201ENST00000337331 SLURP1P55000 103 aa12.2□□□□□ -0.46
NPHP3-201ENST00000337331 RBM3P98179 157 aaKnown RBP12.2□□□□□ -0.46
NPHP3-201ENST00000337331 C10orf105Q8TEF2 133 aa12.2□□□□□ -0.46
NPHP3-201ENST00000337331 Q9H8V8 135 aa12.2□□□□□ -0.46
NPHP3-201ENST00000337331 NOP10Q9NPE3 64 aaKnown RBP12.2□□□□□ -0.46
NPHP3-201ENST00000337331 SOCS3O14543 225 aa12.19□□□□□ -0.46
NPHP3-201ENST00000337331 RBMY1FQ15415 496 aaKnown RBP12.19□□□□□ -0.46
NPHP3-201ENST00000337331 SDIM1Q6ZPB5 146 aa12.19□□□□□ -0.46
NPHP3-201ENST00000337331 C9orf47Q6ZRZ4 202 aa12.19□□□□□ -0.46
NPHP3-201ENST00000337331 PKD1L2Q7Z442 2459 aa12.19□□□□□ -0.46
NPHP3-201ENST00000337331 FN1P02751 2386 aaKnown RBP12.18□□□□□ -0.46
NPHP3-201ENST00000337331 CHD7Q9P2D1 2997 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 A0A0U1RQV1 116 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 COX7CP15954 63 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 CLPSL2Q6UWE3 100 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 UNQ9165/PRO28630Q6UXU0 137 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 TNRC6BQ9UPQ9 1833 aaKnown RBP12.18□□□□□ -0.46
NPHP3-201ENST00000337331 ATP5G1P05496 136 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 DEFB121Q5J5C9 76 aa12.18□□□□□ -0.46
NPHP3-201ENST00000337331 PRRC2CQ9Y520 2896 aaKnown RBP12.17□□□□□ -0.46
NPHP3-201ENST00000337331 P0DMU3 169 aa12.17□□□□□ -0.46
NPHP3-201ENST00000337331 FAM231AP0DMU4 169 aa12.17□□□□□ -0.46
NPHP3-201ENST00000337331 FAM231CP0DMU5 169 aa12.17□□□□□ -0.46
NPHP3-201ENST00000337331 TRAV25A0A0B4J276 109 aa12.16□□□□□ -0.46
NPHP3-201ENST00000337331 ZNF561-AS1K7EIQ3 104 aa12.16□□□□□ -0.46
NPHP3-201ENST00000337331 ANGP03950 147 aaKnown RBP12.16□□□□□ -0.46
NPHP3-201ENST00000337331 BRK1Q8WUW1 75 aa12.16□□□□□ -0.46
NPHP3-201ENST00000337331 SIRPDQ9H106 197 aa12.16□□□□□ -0.46
NPHP3-201ENST00000337331 LAMA2P24043 3122 aaKnown RBP12.16□□□□□ -0.46
NPHP3-201ENST00000337331 CHD8Q9HCK8 2581 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 TRBV12-3P01733 135 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 FBXL19-AS1Q494R0 122 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 ODF3Q96PU9 254 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 LAMA3Q16787 3333 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 CCL24O00175 119 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 H7C423 109 aa12.15□□□□□ -0.46
NPHP3-201ENST00000337331 SPTBN4Q9H254 2564 aa12.14□□□□□ -0.47
NPHP3-201ENST00000337331 TRAV13-2A0A0B4J235 113 aa12.14□□□□□ -0.47
NPHP3-201ENST00000337331 C5orf38Q86SI9 138 aa12.14□□□□□ -0.47
NPHP3-201ENST00000337331 IMUPQ9GZP8 106 aa12.14□□□□□ -0.47
NPHP3-201ENST00000337331 XCL1P47992 114 aa12.14□□□□□ -0.47
NPHP3-201ENST00000337331 IGHG2P01859 326 aa12.13□□□□□ -0.47
NPHP3-201ENST00000337331 DAZ2Q13117 558 aaKnown RBP12.13□□□□□ -0.47
NPHP3-201ENST00000337331 DAZ4Q86SG3 579 aaKnown RBP12.13□□□□□ -0.47
NPHP3-201ENST00000337331 NRACQ8N912 160 aa12.13□□□□□ -0.47
NPHP3-201ENST00000337331 LINC00526Q96FQ7 95 aa12.13□□□□□ -0.47
NPHP3-201ENST00000337331 DAZ3Q9NR90 486 aaKnown RBP12.13□□□□□ -0.47
NPHP3-201ENST00000337331 IGHV4OR15-8A0A075B7B6 117 aa12.13□□□□□ -0.47
NPHP3-201ENST00000337331 A0A087WW49 117 aa12.13□□□□□ -0.47
NPHP3-201ENST00000337331 TRBV30A0A0K0K1B3 111 aa12.13□□□□□ -0.47
NPHP3-201ENST00000337331 A0A0J9YXY3 114 aa12.12□□□□□ -0.47
NPHP3-201ENST00000337331 K7EMT4 169 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 HAMPP81172 84 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 C20orf197Q8N268 126 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 Q9HAA7 133 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 ADAMTS20P59510 1910 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 CEMP1Q6PRD7 247 aaPredicted RBP12.11□□□□□ -0.47
NPHP3-201ENST00000337331 IGHV3-30-3P0DP02 117 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 UBE2DNLQ8IWF7 75 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 WFDC11Q8NEX6 87 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 CCDC140Q96MF4 163 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 MDFICQ9P1T7 246 aa12.11□□□□□ -0.47
NPHP3-201ENST00000337331 GPHB5Q86YW7 130 aa12.1□□□□□ -0.47
NPHP3-201ENST00000337331 TMEM263Q8WUH6 116 aaKnown RBP12.1□□□□□ -0.47
NPHP3-201ENST00000337331 UBL5Q9BZL1 73 aa12.1□□□□□ -0.47
NPHP3-201ENST00000337331 FSTL3O95633 263 aa12.1□□□□□ -0.47
NPHP3-201ENST00000337331 TMEM258P61165 79 aa12.1□□□□□ -0.47
NPHP3-201ENST00000337331 LMO4P61968 165 aa12.09□□□□□ -0.47
NPHP3-201ENST00000337331 TIMM17AQ99595 171 aa12.09□□□□□ -0.47
NPHP3-201ENST00000337331 C10orf142B7Z368 130 aa12.09□□□□□ -0.47
NPHP3-201ENST00000337331 PSCAO43653 123 aa12.09□□□□□ -0.47
NPHP3-201ENST00000337331 PRB1P04280 392 aa12.08□□□□□ -0.48
NPHP3-201ENST00000337331 TRAV23DV6A0A075B6W5 121 aa12.08□□□□□ -0.48
NPHP3-201ENST00000337331 C14orf132Q9NPU4 83 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 C5orf42Q9H799 3197 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 F8WEM9 126 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 ODF3BA8MYP8 253 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 MED14OSP0DP75 135 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 APOC4P55056 127 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 TMEM61Q8N0U2 210 aa12.07□□□□□ -0.48
NPHP3-201ENST00000337331 BRI3O95415 125 aa12.06□□□□□ -0.48
NPHP3-201ENST00000337331 C11orf21Q9P2W6 132 aa12.06□□□□□ -0.48
NPHP3-201ENST00000337331 A0A0J9YX75 114 aa12.06□□□□□ -0.48
NPHP3-201ENST00000337331 DEFB113Q30KQ7 82 aa12.06□□□□□ -0.48
NPHP3-201ENST00000337331 Q6ZSV7 163 aa12.06□□□□□ -0.48
NPHP3-201ENST00000337331 SERP2Q8N6R1 65 aa12.05□□□□□ -0.48
NPHP3-201ENST00000337331 V9GYY9 64 aa12.05□□□□□ -0.48
NPHP3-201ENST00000337331 MTORP42345 2549 aa12.05□□□□□ -0.48
NPHP3-201ENST00000337331 TSPEAR-AS2P59090 65 aa12.05□□□□□ -0.48
NPHP3-201ENST00000337331 C20orf203Q8NBC4 194 aa12.05□□□□□ -0.48
NPHP3-201ENST00000337331 FAM240AA0A1B0GVK7 77 aa12.04□□□□□ -0.48
NPHP3-201ENST00000337331 LST1O00453 97 aa12.04□□□□□ -0.48
NPHP3-201ENST00000337331 C4orf26Q17RF5 130 aa12.04□□□□□ -0.48
NPHP3-201ENST00000337331 MUC22E2RYF6 1773 aaPredicted RBP12.04□□□□□ -0.48
NPHP3-201ENST00000337331 SND1-IT1Q9HBX3 110 aa12.04□□□□□ -0.48
NPHP3-201ENST00000337331 CHD9Q3L8U1 2897 aa12.04□□□□□ -0.48
NPHP3-201ENST00000337331 PTPRBP23467 1997 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms