RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CIRBP-AS1Q8TBR5 109 aa11.51□□□□□ -0.57
HDDC3-201ENST00000330334 ALKAL2Q6UX46 152 aa11.5□□□□□ -0.57
HDDC3-201ENST00000330334 FAM231DQ6ZW35 169 aa11.5□□□□□ -0.57
HDDC3-201ENST00000330334 GTSF1Q8WW33 167 aa11.5□□□□□ -0.57
HDDC3-201ENST00000330334 FOXA3P55318 350 aaPredicted RBP11.49□□□□□ -0.57
HDDC3-201ENST00000330334 COTL1Q14019 142 aa11.49□□□□□ -0.57
HDDC3-201ENST00000330334 CLPSL2Q6UWE3 100 aa11.49□□□□□ -0.57
HDDC3-201ENST00000330334 TEX261Q6UWH6 196 aa11.49□□□□□ -0.57
HDDC3-201ENST00000330334 C9orf163Q8N9P6 203 aa11.49□□□□□ -0.57
HDDC3-201ENST00000330334 GATD1Q8NB37 220 aa11.49□□□□□ -0.57
HDDC3-201ENST00000330334 DEFB104AQ8WTQ1 72 aa11.49□□□□□ -0.57
HDDC3-201ENST00000330334 IGLV4-60A0A075B6I1 120 aa11.48□□□□□ -0.57
HDDC3-201ENST00000330334 A8MWL6 223 aa11.48□□□□□ -0.57
HDDC3-201ENST00000330334 SMIM15Q7Z3B0 74 aa11.48□□□□□ -0.57
HDDC3-201ENST00000330334 UBE2L6O14933 153 aa11.47□□□□□ -0.57
HDDC3-201ENST00000330334 CT83Q5H943 113 aa11.47□□□□□ -0.57
HDDC3-201ENST00000330334 GATCO43716 136 aaKnown RBP11.46□□□□□ -0.57
HDDC3-201ENST00000330334 NCR2O95944 276 aa11.46□□□□□ -0.57
HDDC3-201ENST00000330334 AMTP48728 403 aa11.46□□□□□ -0.57
HDDC3-201ENST00000330334 IGLV10-54A0A075B6I4 117 aa11.45□□□□□ -0.58
HDDC3-201ENST00000330334 KRTAP10-4P60372 401 aaPredicted RBP11.45□□□□□ -0.58
HDDC3-201ENST00000330334 CNBPP62633 177 aaKnown RBP11.45□□□□□ -0.58
HDDC3-201ENST00000330334 GFRA4Q9GZZ7 299 aa11.45□□□□□ -0.58
HDDC3-201ENST00000330334 TRAV26-2A0A0B4J265 109 aa11.44□□□□□ -0.58
HDDC3-201ENST00000330334 KRTAP29-1A8MX34 341 aaPredicted RBP11.44□□□□□ -0.58
HDDC3-201ENST00000330334 H7C423 109 aa11.44□□□□□ -0.58
HDDC3-201ENST00000330334 SDIM1Q6ZPB5 146 aa11.44□□□□□ -0.58
HDDC3-201ENST00000330334 FAM210AQ96ND0 272 aa11.44□□□□□ -0.58
HDDC3-201ENST00000330334 hCG_2014768A0A024R1R8 64 aa11.43□□□□□ -0.58
HDDC3-201ENST00000330334 TRBV6-5A0A0K0K1A5 114 aa11.42□□□□□ -0.58
HDDC3-201ENST00000330334 FAM231BA6NCW3 169 aa11.42□□□□□ -0.58
HDDC3-201ENST00000330334 J3QL48 77 aa11.42□□□□□ -0.58
HDDC3-201ENST00000330334 RPL39LQ96EH5 51 aaKnown RBP11.42□□□□□ -0.58
HDDC3-201ENST00000330334 EIF5A2Q9GZV4 153 aaKnown RBP11.42□□□□□ -0.58
HDDC3-201ENST00000330334 SDHAF1A6NFY7 115 aa11.41□□□□□ -0.58
HDDC3-201ENST00000330334 LINC01551Q86U37 167 aa11.41□□□□□ -0.58
HDDC3-201ENST00000330334 TSKUQ8WUA8 353 aa11.41□□□□□ -0.58
HDDC3-201ENST00000330334 SMIM7Q9BQ49 75 aa11.41□□□□□ -0.58
HDDC3-201ENST00000330334 hDV102S1A0JD36 115 aa11.4□□□□□ -0.58
HDDC3-201ENST00000330334 CEBPGP53567 150 aa11.4□□□□□ -0.58
HDDC3-201ENST00000330334 BORCS7Q96B45 105 aa11.4□□□□□ -0.58
HDDC3-201ENST00000330334 OSTCQ9NRP0 149 aa11.4□□□□□ -0.58
HDDC3-201ENST00000330334 AP5S1Q9NUS5 200 aa11.4□□□□□ -0.58
HDDC3-201ENST00000330334 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.39□□□□□ -0.59
HDDC3-201ENST00000330334 A0A1B0GUT8 65 aa11.39□□□□□ -0.59
HDDC3-201ENST00000330334 CIRBPQ14011 172 aaKnown RBP11.39□□□□□ -0.59
HDDC3-201ENST00000330334 CFAP161Q6P656 301 aa11.39□□□□□ -0.59
HDDC3-201ENST00000330334 TMEM191AQ9H0A3 160 aa11.39□□□□□ -0.59
HDDC3-201ENST00000330334 ZNF727A8MUV8 499 aa11.38□□□□□ -0.59
HDDC3-201ENST00000330334 HIGD1CA8MV81 97 aa11.38□□□□□ -0.59
HDDC3-201ENST00000330334 I3L3M4 83 aa11.38□□□□□ -0.59
HDDC3-201ENST00000330334 APCSP02743 223 aa11.38□□□□□ -0.59
HDDC3-201ENST00000330334 SRP19P09132 144 aaKnown RBP11.38□□□□□ -0.59
HDDC3-201ENST00000330334 ZNF25P17030 456 aaPredicted RBP11.38□□□□□ -0.59
HDDC3-201ENST00000330334 AMMECR1LQ6DCA0 310 aa11.38□□□□□ -0.59
HDDC3-201ENST00000330334 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.38□□□□□ -0.59
HDDC3-201ENST00000330334 SLPIP03973 132 aa11.37□□□□□ -0.59
HDDC3-201ENST00000330334 IGHV3-64A0A075B6Q5 118 aa11.36□□□□□ -0.59
HDDC3-201ENST00000330334 FGF6P10767 208 aa11.36□□□□□ -0.59
HDDC3-201ENST00000330334 PMCHP20382 165 aa11.36□□□□□ -0.59
HDDC3-201ENST00000330334 LRP1Q07954 4544 aaKnown RBP11.36□□□□□ -0.59
HDDC3-201ENST00000330334 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.35□□□□□ -0.59
HDDC3-201ENST00000330334 IGKV2-29A2NJV5 120 aaPredicted RBP11.35□□□□□ -0.59
HDDC3-201ENST00000330334 GAGE12HA6NDE8 117 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 PANO1I0J062 215 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 OXTP01178 125 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 ESDP10768 282 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 FAM74A3Q4VXF1 159 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 RNASEKQ6P5S7 137 aaKnown RBP11.35□□□□□ -0.59
HDDC3-201ENST00000330334 MRAP2Q96G30 205 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 RNF185Q96GF1 192 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 ST20Q9HBF5 79 aa11.35□□□□□ -0.59
HDDC3-201ENST00000330334 RAB4AP20338 218 aa11.34□□□□□ -0.59
HDDC3-201ENST00000330334 POLR2KP53803 58 aaKnown RBP11.34□□□□□ -0.59
HDDC3-201ENST00000330334 RPL37AP61513 92 aaKnown RBP11.34□□□□□ -0.59
HDDC3-201ENST00000330334 C15orf56Q8N910 161 aa11.34□□□□□ -0.59
HDDC3-201ENST00000330334 CHCHD10Q8WYQ3 142 aaPredicted RBP11.34□□□□□ -0.59
HDDC3-201ENST00000330334 TRBV27A0A0K0K1C4 114 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 GAS8-AS1O95177 125 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 TSHBP01222 138 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 TMEM241Q24JQ0 296 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 OR5A1Q8NGJ0 315 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 BTF3L4Q96K17 158 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 V9GYV3 84 aa11.33□□□□□ -0.6
HDDC3-201ENST00000330334 IGKV3OR2-268A0A0C4DH90 116 aa11.32□□□□□ -0.6
HDDC3-201ENST00000330334 RIGQ13278 110 aa11.32□□□□□ -0.6
HDDC3-201ENST00000330334 MRPL52Q86TS9 123 aaKnown RBP11.32□□□□□ -0.6
HDDC3-201ENST00000330334 TMEM101Q96IK0 257 aa11.32□□□□□ -0.6
HDDC3-201ENST00000330334 PPP1R17O96001 155 aa11.31□□□□□ -0.6
HDDC3-201ENST00000330334 RPS10P46783 165 aaKnown RBP11.31□□□□□ -0.6
HDDC3-201ENST00000330334 NUP35Q8NFH5 326 aa11.31□□□□□ -0.6
HDDC3-201ENST00000330334 ISOC2Q96AB3 205 aa11.31□□□□□ -0.6
HDDC3-201ENST00000330334 FAT3Q8TDW7 4589 aa11.3□□□□□ -0.6
HDDC3-201ENST00000330334 GVQW2A0A096LPI5 108 aaPredicted RBP11.3□□□□□ -0.6
HDDC3-201ENST00000330334 FOXI1Q12951 378 aa11.3□□□□□ -0.6
HDDC3-201ENST00000330334 AMN1Q8IY45 258 aa11.3□□□□□ -0.6
HDDC3-201ENST00000330334 SMDT1Q9H4I9 107 aa11.3□□□□□ -0.6
HDDC3-201ENST00000330334 NAT8BQ9UHF3 227 aa11.3□□□□□ -0.6
HDDC3-201ENST00000330334 VCYO14598 125 aa11.29□□□□□ -0.6
HDDC3-201ENST00000330334 RPL23P62829 140 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms