RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ZFAND2AQ8N6M9 145 aa13.08□□□□□ -0.32
SYNPO-201ENST00000307662 LINC00467Q9BRT7 94 aa13.07□□□□□ -0.32
SYNPO-201ENST00000307662 ODF3BA8MYP8 253 aa13.07□□□□□ -0.32
SYNPO-201ENST00000307662 C4orf3Q8WVX3 66 aa13.07□□□□□ -0.32
SYNPO-201ENST00000307662 J3QKU1 62 aa13.06□□□□□ -0.32
SYNPO-201ENST00000307662 NDUFA7O95182 113 aa13.06□□□□□ -0.32
SYNPO-201ENST00000307662 ENHOQ6UWT2 76 aa13.06□□□□□ -0.32
SYNPO-201ENST00000307662 IMUPQ9GZP8 106 aa13.06□□□□□ -0.32
SYNPO-201ENST00000307662 SVIPQ8NHG7 77 aa13.05□□□□□ -0.32
SYNPO-201ENST00000307662 MPLKIPQ8TAP9 179 aa13.05□□□□□ -0.32
SYNPO-201ENST00000307662 KLK12Q9UKR0 248 aa13.05□□□□□ -0.32
SYNPO-201ENST00000307662 NCOA6Q14686 2063 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-201ENST00000307662 IGLV2-11P01706 119 aa13.05□□□□□ -0.32
SYNPO-201ENST00000307662 FBXL19-AS1Q494R0 122 aa13.05□□□□□ -0.32
SYNPO-201ENST00000307662 FREM1Q5H8C1 2179 aa13.04□□□□□ -0.32
SYNPO-201ENST00000307662 A6NDX4 124 aa13.04□□□□□ -0.32
SYNPO-201ENST00000307662 NDUFC2-KCTD14E9PQ53 114 aa13.04□□□□□ -0.32
SYNPO-201ENST00000307662 MAP6D1Q9H9H5 199 aa13.04□□□□□ -0.32
SYNPO-201ENST00000307662 DAZAP2Q15038 168 aaPredicted RBP13.04□□□□□ -0.32
SYNPO-201ENST00000307662 TECTAO75443 2155 aa13.04□□□□□ -0.32
SYNPO-201ENST00000307662 C20orf173Q96LM9 149 aa13.04□□□□□ -0.32
SYNPO-201ENST00000307662 PRO0255Q9UI72 69 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 IGF1P05019 195 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 XGP55808 180 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 SLPIP03973 132 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 CCL18P55774 89 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 TMEM131Q92545 1883 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 ZMAT4Q9H898 229 aa13.03□□□□□ -0.32
SYNPO-201ENST00000307662 UFSP1Q6NVU6 142 aa13.02□□□□□ -0.32
SYNPO-201ENST00000307662 CCDC179H3BU77 68 aa13.02□□□□□ -0.33
SYNPO-201ENST00000307662 COL4A4P53420 1690 aaPredicted RBP13.02□□□□□ -0.33
SYNPO-201ENST00000307662 M0QY20 66 aa13.02□□□□□ -0.33
SYNPO-201ENST00000307662 DEFB113Q30KQ7 82 aa13.02□□□□□ -0.33
SYNPO-201ENST00000307662 UBE2AP49459 152 aa13.02□□□□□ -0.33
SYNPO-201ENST00000307662 SERP2Q8N6R1 65 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 FAM240AA0A1B0GVK7 77 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 LINC01548A6NM66 108 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 SMAD5-AS1Q9Y6J3 95 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 KIAA1549LQ6ZVL6 1849 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 IBA57-AS1B1ANH7 110 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 PIK3CD-AS1Q5SR53 167 aa13.01□□□□□ -0.33
SYNPO-201ENST00000307662 BDP1A6H8Y1 2624 aa13□□□□□ -0.33
SYNPO-201ENST00000307662 H7C423 109 aa13□□□□□ -0.33
SYNPO-201ENST00000307662 NRACQ8N912 160 aa13□□□□□ -0.33
SYNPO-201ENST00000307662 MUC6Q6W4X9 2439 aa13□□□□□ -0.33
SYNPO-201ENST00000307662 Q8NA96 180 aa13□□□□□ -0.33
SYNPO-201ENST00000307662 SPTSSBQ8NFR3 76 aa13□□□□□ -0.33
SYNPO-201ENST00000307662 ALPK3Q96L96 1907 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 Q6ZTI0 123 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 ZFAND3Q9H8U3 227 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 FAM208BQ5VWN6 2430 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 TIMM17BO60830 172 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 LINC00310P59036 64 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 PLCE1Q9P212 2302 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 TRBV27A0A0K0K1C4 114 aa12.99□□□□□ -0.33
SYNPO-201ENST00000307662 LST1O00453 97 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 INSL3P51460 131 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 Q8N976 141 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 H0Y9J4 135 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 K7EQG2 157 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 PYGO1Q9Y3Y4 419 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 DEFB135Q30KP9 77 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 SCXQ7RTU7 201 aa12.98□□□□□ -0.33
SYNPO-201ENST00000307662 TRBV6-5A0A0K0K1A5 114 aa12.97□□□□□ -0.33
SYNPO-201ENST00000307662 DEFB4AO15263 64 aa12.97□□□□□ -0.33
SYNPO-201ENST00000307662 COX7CP15954 63 aa12.97□□□□□ -0.33
SYNPO-201ENST00000307662 USP17L23D6RBM5 183 aa12.97□□□□□ -0.33
SYNPO-201ENST00000307662 A0A0U1RQV1 116 aa12.96□□□□□ -0.33
SYNPO-201ENST00000307662 LINC00269Q8N2A0 174 aa12.96□□□□□ -0.33
SYNPO-201ENST00000307662 ATP5EP56381 51 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-201ENST00000307662 REG3AQ06141 175 aa12.96□□□□□ -0.34
SYNPO-201ENST00000307662 MRPL55Q7Z7F7 128 aaKnown RBP12.96□□□□□ -0.34
SYNPO-201ENST00000307662 F8W735 103 aaPredicted RBP12.95□□□□□ -0.34
SYNPO-201ENST00000307662 FAM222AQ5U5X8 452 aa12.95□□□□□ -0.34
SYNPO-201ENST00000307662 NDUFC1O43677 76 aa12.94□□□□□ -0.34
SYNPO-201ENST00000307662 ADAMTS9Q9P2N4 1935 aa12.94□□□□□ -0.34
SYNPO-201ENST00000307662 ANKHD1Q8IWZ3 2542 aaKnown RBP12.94□□□□□ -0.34
SYNPO-201ENST00000307662 DSCAML1Q8TD84 2053 aa12.94□□□□□ -0.34
SYNPO-201ENST00000307662 PTPRQQ9UMZ3 2332 aa12.94□□□□□ -0.34
SYNPO-201ENST00000307662 CHCHD10Q8WYQ3 142 aaPredicted RBP12.94□□□□□ -0.34
SYNPO-201ENST00000307662 PCDH15Q96QU1 1955 aa12.93□□□□□ -0.34
SYNPO-201ENST00000307662 LY6LH3BQJ8 138 aa12.93□□□□□ -0.34
SYNPO-201ENST00000307662 Q6Q795 121 aa12.93□□□□□ -0.34
SYNPO-201ENST00000307662 WFDC11Q8NEX6 87 aa12.93□□□□□ -0.34
SYNPO-201ENST00000307662 Q6ZS46 218 aa12.93□□□□□ -0.34
SYNPO-201ENST00000307662 LRRC75A-AS1Q8N1F1 130 aa12.92□□□□□ -0.34
SYNPO-201ENST00000307662 TSHBP01222 138 aa12.92□□□□□ -0.34
SYNPO-201ENST00000307662 V9GYY9 64 aa12.92□□□□□ -0.34
SYNPO-201ENST00000307662 A8MZ25 164 aa12.92□□□□□ -0.34
SYNPO-201ENST00000307662 CLUHP3Q96NS8 147 aa12.92□□□□□ -0.34
SYNPO-201ENST00000307662 TNFRSF13BO14836 293 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-201ENST00000307662 EBI3Q14213 229 aa12.92□□□□□ -0.34
SYNPO-201ENST00000307662 FSTL3O95633 263 aa12.91□□□□□ -0.34
SYNPO-201ENST00000307662 LMO4P61968 165 aa12.9□□□□□ -0.34
SYNPO-201ENST00000307662 URB1-AS1Q96HZ7 61 aa12.9□□□□□ -0.34
SYNPO-201ENST00000307662 C6orf99Q4VX62 202 aa12.89□□□□□ -0.35
SYNPO-201ENST00000307662 NRGNQ92686 78 aa12.89□□□□□ -0.35
SYNPO-201ENST00000307662 IGKV4-1P06312 121 aa12.89□□□□□ -0.35
SYNPO-201ENST00000307662 RNASE3P12724 160 aaKnown RBP12.89□□□□□ -0.35
SYNPO-201ENST00000307662 C11orf21Q9P2W6 132 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms