RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 A0A0B4J2C4 111 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 C20orf203Q8NBC4 194 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 ZNF462Q96JM2 2506 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 HIVEP2P31629 2446 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 CRYGBP07316 175 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 C5orf56Q8N8D9 126 aa11.63□□□□□ -0.55
SHH-201ENST00000297261 TRAV4A0A0B4J268 109 aa11.62□□□□□ -0.55
SHH-201ENST00000297261 ZNF843Q8N446 348 aa11.62□□□□□ -0.55
SHH-201ENST00000297261 SS18Q15532 418 aa11.62□□□□□ -0.55
SHH-201ENST00000297261 CRLF1O75462 422 aa11.61□□□□□ -0.55
SHH-201ENST00000297261 FN1P02751 2386 aaKnown RBP11.61□□□□□ -0.55
SHH-201ENST00000297261 A0A0J9YXY3 114 aa11.61□□□□□ -0.55
SHH-201ENST00000297261 TRBV12-3P01733 135 aa11.61□□□□□ -0.55
SHH-201ENST00000297261 EPG5Q9HCE0 2579 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 LINC01548A6NM66 108 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 U3KQE9 123 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 A0A096LNJ9 63 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 ATOX1O00244 68 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 IGHV3-33P01772 117 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 RBMY1FQ15415 496 aaKnown RBP11.6□□□□□ -0.55
SHH-201ENST00000297261 J3KT08 172 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 C5orf38Q86SI9 138 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 SND1-IT1Q9HBX3 110 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 TRBV7-3A0A075B6L6 115 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 DOPEY1Q5JWR5 2465 aa11.6□□□□□ -0.55
SHH-201ENST00000297261 RAI1Q7Z5J4 1906 aaPredicted RBP11.59□□□□□ -0.55
SHH-201ENST00000297261 C11orf21Q9P2W6 132 aa11.59□□□□□ -0.55
SHH-201ENST00000297261 Q9HAA7 133 aa11.59□□□□□ -0.55
SHH-201ENST00000297261 SMAD5-AS1Q9Y6J3 95 aa11.59□□□□□ -0.55
SHH-201ENST00000297261 IGHV1-58A0A0C4DH39 117 aa11.59□□□□□ -0.55
SHH-201ENST00000297261 CCDC179H3BU77 68 aa11.58□□□□□ -0.55
SHH-201ENST00000297261 CLPSL2Q6UWE3 100 aa11.58□□□□□ -0.55
SHH-201ENST00000297261 NRACQ8N912 160 aa11.58□□□□□ -0.56
SHH-201ENST00000297261 CCDC140Q96MF4 163 aa11.58□□□□□ -0.56
SHH-201ENST00000297261 TRIAP1O43715 76 aa11.58□□□□□ -0.56
SHH-201ENST00000297261 RBM3P98179 157 aaKnown RBP11.58□□□□□ -0.56
SHH-201ENST00000297261 Q6ZS46 218 aa11.58□□□□□ -0.56
SHH-201ENST00000297261 MRPS12O15235 138 aaKnown RBP11.57□□□□□ -0.56
SHH-201ENST00000297261 AKAP13Q12802 2813 aa11.57□□□□□ -0.56
SHH-201ENST00000297261 LINC00643Q86TS7 51 aa11.57□□□□□ -0.56
SHH-201ENST00000297261 P0DMU3 169 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 FAM231AP0DMU4 169 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 FAM231CP0DMU5 169 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 MED14OSP0DP75 135 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 NFE4Q86UQ8 179 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 DEFB136Q30KP8 78 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 VSIG2Q96IQ7 327 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 VPREB3Q9UKI3 123 aa11.56□□□□□ -0.56
SHH-201ENST00000297261 LECT2O14960 151 aa11.55□□□□□ -0.56
SHH-201ENST00000297261 ZNF22P17026 224 aaPredicted RBP11.55□□□□□ -0.56
SHH-201ENST00000297261 NSUN5P1Q3KNT7 163 aa11.55□□□□□ -0.56
SHH-201ENST00000297261 ORMDL1Q9P0S3 153 aa11.55□□□□□ -0.56
SHH-201ENST00000297261 XCL1P47992 114 aa11.55□□□□□ -0.56
SHH-201ENST00000297261 A0A096LPF7 62 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 Q6ZQT7 251 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 APRG1Q8IVJ8 170 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 IGHV3-30P01768 117 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 IGHV3-30-5P0DP03 117 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 EBI3Q14213 229 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 TET2Q6N021 2002 aaPredicted RBP11.54□□□□□ -0.56
SHH-201ENST00000297261 MIAQ16674 131 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 C1orf43Q9BWL3 253 aa11.54□□□□□ -0.56
SHH-201ENST00000297261 FREM2Q5SZK8 3169 aa11.53□□□□□ -0.56
SHH-201ENST00000297261 RPL32P62910 135 aaKnown RBP11.53□□□□□ -0.56
SHH-201ENST00000297261 H3BUA1 57 aa11.53□□□□□ -0.56
SHH-201ENST00000297261 ZFAND2AQ8N6M9 145 aa11.53□□□□□ -0.56
SHH-201ENST00000297261 POLQO75417 2590 aa11.52□□□□□ -0.56
SHH-201ENST00000297261 C20orf173Q96LM9 149 aa11.52□□□□□ -0.56
SHH-201ENST00000297261 NOP10Q9NPE3 64 aaKnown RBP11.52□□□□□ -0.56
SHH-201ENST00000297261 C14orf132Q9NPU4 83 aa11.52□□□□□ -0.56
SHH-201ENST00000297261 DAZ2Q13117 558 aaKnown RBP11.52□□□□□ -0.57
SHH-201ENST00000297261 DAZ4Q86SG3 579 aaKnown RBP11.52□□□□□ -0.57
SHH-201ENST00000297261 MRAPQ8TCY5 172 aa11.52□□□□□ -0.57
SHH-201ENST00000297261 DSCR8Q96T75 97 aa11.52□□□□□ -0.57
SHH-201ENST00000297261 DAZ3Q9NR90 486 aaKnown RBP11.52□□□□□ -0.57
SHH-201ENST00000297261 A8MZ25 164 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 LINC01619G3V211 115 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 H0YGX0 51 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 IGHG2P01859 326 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 CDKN2A-AS1Q9UH64 79 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 A6NDX4 124 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 MIR7-3HGQ8N6C7 128 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 ZFAND3Q9H8U3 227 aa11.51□□□□□ -0.57
SHH-201ENST00000297261 ATP5G1P05496 136 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 TRAV25A0A0B4J276 109 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 SDIM1Q6ZPB5 146 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 Q8N6K4 173 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 SPANXCQ9NY87 97 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 PRRC2AP48634 2157 aaKnown RBP11.5□□□□□ -0.57
SHH-201ENST00000297261 ABCA12Q86UK0 2595 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 IGLV4-3A0A075B6K6 122 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 TMEM223A0PJW6 202 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 UQCRQO14949 82 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 PRR9Q5T870 116 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 HIST2H2BCQ6DN03 193 aa11.5□□□□□ -0.57
SHH-201ENST00000297261 DPH3Q96FX2 82 aa11.49□□□□□ -0.57
SHH-201ENST00000297261 DSPP15924 2871 aaKnown RBP11.49□□□□□ -0.57
SHH-201ENST00000297261 ELANEP08246 267 aa11.49□□□□□ -0.57
SHH-201ENST00000297261 BBC3Q96PG8 261 aaPredicted RBP11.49□□□□□ -0.57
SHH-201ENST00000297261 TRBV30A0A0K0K1B3 111 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms