RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 DEFB104AQ8WTQ1 72 aa13.77□□□□□ -0.21
NEDD8-201ENST00000250495 SMIM12Q96EX1 92 aa13.77□□□□□ -0.21
NEDD8-201ENST00000250495 CHAC1Q9BUX1 264 aa13.77□□□□□ -0.21
NEDD8-201ENST00000250495 MUC21A0A0G2JKD1 596 aa13.76□□□□□ -0.21
NEDD8-201ENST00000250495 MUC21A0A140T8X8 626 aa13.76□□□□□ -0.21
NEDD8-201ENST00000250495 SMIM17P0DL12 118 aa13.76□□□□□ -0.21
NEDD8-201ENST00000250495 CHCHD5Q9BSY4 110 aa13.76□□□□□ -0.21
NEDD8-201ENST00000250495 BIN3Q9NQY0 253 aa13.76□□□□□ -0.21
NEDD8-201ENST00000250495 TRAV9-1A0A075B6T8 112 aa13.75□□□□□ -0.21
NEDD8-201ENST00000250495 TGIF2-C20orf24A0A0A6YYL0 155 aa13.75□□□□□ -0.21
NEDD8-201ENST00000250495 ANGP03950 147 aaKnown RBP13.75□□□□□ -0.21
NEDD8-201ENST00000250495 RPS10P46783 165 aaKnown RBP13.75□□□□□ -0.21
NEDD8-201ENST00000250495 SSTP61278 116 aa13.75□□□□□ -0.21
NEDD8-201ENST00000250495 MPV17L2Q567V2 206 aa13.75□□□□□ -0.21
NEDD8-201ENST00000250495 K7EN84 100 aa13.73□□□□□ -0.21
NEDD8-201ENST00000250495 MIAQ16674 131 aa13.73□□□□□ -0.21
NEDD8-201ENST00000250495 AP1S3Q96PC3 154 aa13.73□□□□□ -0.21
NEDD8-201ENST00000250495 OSTCQ9NRP0 149 aa13.73□□□□□ -0.21
NEDD8-201ENST00000250495 KIF25-AS1Q9Y6Z4 181 aa13.73□□□□□ -0.21
NEDD8-201ENST00000250495 KRTAP29-1A8MX34 341 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-201ENST00000250495 IGLV2-8P01709 118 aa13.72□□□□□ -0.21
NEDD8-201ENST00000250495 CIRBP-AS1Q8TBR5 109 aa13.72□□□□□ -0.21
NEDD8-201ENST00000250495 NTM-AS1Q6ZSK4 140 aa13.71□□□□□ -0.21
NEDD8-201ENST00000250495 DAZAP1Q96EP5 407 aaKnown RBP13.71□□□□□ -0.21
NEDD8-201ENST00000250495 FAM231DQ6ZW35 169 aa13.7□□□□□ -0.22
NEDD8-201ENST00000250495 TRBV25-1A0A075B6N4 114 aa13.69□□□□□ -0.22
NEDD8-201ENST00000250495 S100A6P06703 90 aa13.69□□□□□ -0.22
NEDD8-201ENST00000250495 RPS20P60866 119 aaKnown RBP13.69□□□□□ -0.22
NEDD8-201ENST00000250495 USP17L23D6RBM5 183 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 H7C1H1 209 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 HLA-DQA1P01909 254 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 RBX1P62877 108 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 GAGE6Q13070 117 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 PRR34Q9NV39 138 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 V9GYV3 84 aa13.68□□□□□ -0.22
NEDD8-201ENST00000250495 C5orf52A6NGY3 159 aa13.67□□□□□ -0.22
NEDD8-201ENST00000250495 DGAT2L7PQ6IED9 249 aa13.67□□□□□ -0.22
NEDD8-201ENST00000250495 FER1L6-AS1Q8NA97 138 aa13.67□□□□□ -0.22
NEDD8-201ENST00000250495 TPPP3Q9BW30 176 aa13.67□□□□□ -0.22
NEDD8-201ENST00000250495 IGLC6P0CF74 106 aa13.66□□□□□ -0.22
NEDD8-201ENST00000250495 GZMBP10144 247 aa13.66□□□□□ -0.22
NEDD8-201ENST00000250495 CACNG7P62955 275 aa13.66□□□□□ -0.22
NEDD8-201ENST00000250495 IQCJQ1A5X6 159 aa13.66□□□□□ -0.22
NEDD8-201ENST00000250495 LINC00269Q8N2A0 174 aa13.66□□□□□ -0.22
NEDD8-201ENST00000250495 OR2D3Q8NGH3 330 aa13.66□□□□□ -0.22
NEDD8-201ENST00000250495 IGHV1-24A0A0C4DH33 117 aa13.65□□□□□ -0.22
NEDD8-201ENST00000250495 M0QY20 66 aa13.65□□□□□ -0.22
NEDD8-201ENST00000250495 PHOX2AO14813 284 aa13.65□□□□□ -0.22
NEDD8-201ENST00000250495 TRGC2P03986 189 aa13.65□□□□□ -0.22
NEDD8-201ENST00000250495 MGPP08493 103 aa13.65□□□□□ -0.22
NEDD8-201ENST00000250495 XKRY2A2RUG3 117 aa13.64□□□□□ -0.23
NEDD8-201ENST00000250495 F2Z2F3 143 aa13.64□□□□□ -0.23
NEDD8-201ENST00000250495 PRSS1P07477 247 aa13.64□□□□□ -0.23
NEDD8-201ENST00000250495 C19orf71A6NCJ1 209 aa13.63□□□□□ -0.23
NEDD8-201ENST00000250495 KRTAP10-4P60372 401 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-201ENST00000250495 COX19Q49B96 90 aa13.63□□□□□ -0.23
NEDD8-201ENST00000250495 CLPSL2Q6UWE3 100 aa13.63□□□□□ -0.23
NEDD8-201ENST00000250495 C9orf163Q8N9P6 203 aa13.63□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BKO60814 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 P01737 135 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BJP06899 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BOP23527 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BBP33778 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BDP58876 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 SNRPEP62304 92 aaKnown RBP13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BCP62807 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST2H2BEQ16778 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.62□□□□□ -0.23
NEDD8-201ENST00000250495 SUMO4Q6EEV6 95 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BHQ93079 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BNQ99877 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 HIST1H2BMQ99879 126 aa13.62□□□□□ -0.23
NEDD8-201ENST00000250495 TRGC1P0CF51 173 aa13.61□□□□□ -0.23
NEDD8-201ENST00000250495 REG3AQ06141 175 aa13.61□□□□□ -0.23
NEDD8-201ENST00000250495 CT83Q5H943 113 aa13.61□□□□□ -0.23
NEDD8-201ENST00000250495 KRTAP26-1Q6PEX3 210 aa13.61□□□□□ -0.23
NEDD8-201ENST00000250495 RASL11AQ6T310 242 aa13.61□□□□□ -0.23
NEDD8-201ENST00000250495 RNASE7Q9H1E1 156 aaKnown RBP13.61□□□□□ -0.23
NEDD8-201ENST00000250495 TRAV8-4A0A0B4J246 113 aa13.6□□□□□ -0.23
NEDD8-201ENST00000250495 SMIM27A0A1W2PRY6 76 aa13.6□□□□□ -0.23
NEDD8-201ENST00000250495 GATCO43716 136 aaKnown RBP13.6□□□□□ -0.23
NEDD8-201ENST00000250495 OXTP01178 125 aa13.6□□□□□ -0.23
NEDD8-201ENST00000250495 A0A1B0GUV1 79 aa13.59□□□□□ -0.23
NEDD8-201ENST00000250495 LYZL1Q6UWQ5 148 aa13.59□□□□□ -0.23
NEDD8-201ENST00000250495 TMEM243Q9BU79 118 aa13.59□□□□□ -0.23
NEDD8-201ENST00000250495 NIT2Q9NQR4 276 aa13.59□□□□□ -0.23
NEDD8-201ENST00000250495 NTF3P20783 257 aa13.58□□□□□ -0.24
NEDD8-201ENST00000250495 FABP9Q0Z7S8 132 aa13.58□□□□□ -0.24
NEDD8-201ENST00000250495 NUDT10Q8NFP7 164 aa13.58□□□□□ -0.24
NEDD8-201ENST00000250495 NUDT11Q96G61 164 aa13.58□□□□□ -0.24
NEDD8-201ENST00000250495 DPH3P1Q9H4G8 78 aa13.58□□□□□ -0.24
NEDD8-201ENST00000250495 IGLV10-54A0A075B6I4 117 aa13.57□□□□□ -0.24
NEDD8-201ENST00000250495 MT-ND6P03923 174 aa13.57□□□□□ -0.24
NEDD8-201ENST00000250495 S100A8P05109 93 aa13.57□□□□□ -0.24
NEDD8-201ENST00000250495 RPL37AP61513 92 aaKnown RBP13.57□□□□□ -0.24
NEDD8-201ENST00000250495 WDR73Q6P4I2 378 aa13.57□□□□□ -0.24
NEDD8-201ENST00000250495 C20orf203Q8NBC4 194 aa13.57□□□□□ -0.24
NEDD8-201ENST00000250495 PGLYRP4Q96LB8 373 aa13.57□□□□□ -0.24
NEDD8-201ENST00000250495 COA6Q5JTJ3 125 aaKnown RBP13.56□□□□□ -0.24
NEDD8-201ENST00000250495 TSKUQ8WUA8 353 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms