RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 ERASQ7Z444 233 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 SLC25A29Q8N8R3 303 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 PMCHL2Q9BQD1 86 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 DNAH3Q8TD57 4116 aa12.9□□□□□ -0.34
VIM-201ENST00000224237 NBEAL1Q6ZS30 2694 aa12.9□□□□□ -0.34
VIM-201ENST00000224237 TRBV7-3A0A075B6L6 115 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 IGHV4-28A0A0C4DH34 117 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 TRBV6-4A0A1B0GX49 114 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 RPL36AP83881 106 aaKnown RBP12.89□□□□□ -0.35
VIM-201ENST00000224237 RPL36ALQ969Q0 106 aaKnown RBP12.89□□□□□ -0.35
VIM-201ENST00000224237 TRGV4A0A0C4DH28 118 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 DEFB130BP0DP73 79 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 DEFB130AP0DP74 79 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 ODF1Q14990 250 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 SLC25A34Q6PIV7 304 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 ZMAT4Q9H898 229 aa12.89□□□□□ -0.35
VIM-201ENST00000224237 MGAM2Q2M2H8 2515 aa12.88□□□□□ -0.35
VIM-201ENST00000224237 Q8NAQ8 132 aa12.88□□□□□ -0.35
VIM-201ENST00000224237 ZNRF2Q8NHG8 242 aa12.88□□□□□ -0.35
VIM-201ENST00000224237 RPL39P62891 51 aaKnown RBP12.87□□□□□ -0.35
VIM-201ENST00000224237 COL5A1-AS1Q5SY13 56 aa12.87□□□□□ -0.35
VIM-201ENST00000224237 FAM222AQ5U5X8 452 aa12.87□□□□□ -0.35
VIM-201ENST00000224237 C20orf203Q8NBC4 194 aa12.87□□□□□ -0.35
VIM-201ENST00000224237 TIMM17AQ99595 171 aa12.87□□□□□ -0.35
VIM-201ENST00000224237 TRAV12-1A0A0B4J245 112 aa12.87□□□□□ -0.35
VIM-201ENST00000224237 FHL2Q14192 279 aa12.87□□□□□ -0.35
VIM-201ENST00000224237 IGIPA6NJ69 53 aa12.86□□□□□ -0.35
VIM-201ENST00000224237 PRB2P02812 416 aaPredicted RBP12.86□□□□□ -0.35
VIM-201ENST00000224237 COTL1Q14019 142 aa12.86□□□□□ -0.35
VIM-201ENST00000224237 BATFQ16520 125 aa12.86□□□□□ -0.35
VIM-201ENST00000224237 PHLDA1Q8WV24 401 aaPredicted RBP12.86□□□□□ -0.35
VIM-201ENST00000224237 TMEM141Q96I45 108 aa12.86□□□□□ -0.35
VIM-201ENST00000224237 DKK2Q9UBU2 259 aa12.86□□□□□ -0.35
VIM-201ENST00000224237 A0A087WX48 190 aa12.85□□□□□ -0.35
VIM-201ENST00000224237 DAZ4Q86SG3 579 aaKnown RBP12.85□□□□□ -0.35
VIM-201ENST00000224237 BAALCQ8WXS3 180 aa12.85□□□□□ -0.35
VIM-201ENST00000224237 DAZ3Q9NR90 486 aaKnown RBP12.85□□□□□ -0.35
VIM-201ENST00000224237 IGHV3-38A0A0C4DH36 116 aa12.85□□□□□ -0.35
VIM-201ENST00000224237 DEFB4AO15263 64 aa12.85□□□□□ -0.35
VIM-201ENST00000224237 COX8AP10176 69 aa12.85□□□□□ -0.35
VIM-201ENST00000224237 UBE2D3P61077 147 aa12.84□□□□□ -0.35
VIM-201ENST00000224237 UBE2D2P62837 147 aa12.84□□□□□ -0.35
VIM-201ENST00000224237 LINC00469Q8N7U9 141 aa12.84□□□□□ -0.35
VIM-201ENST00000224237 PRADC1Q9BSG0 188 aa12.84□□□□□ -0.35
VIM-201ENST00000224237 GAGE12JA6NER3 117 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 GAGE1Q13065 139 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 GAGE4Q13068 117 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 GAGE5Q13069 117 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 GAGE13Q4V321 117 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 F8VRH5 84 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 DPM2O94777 84 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 IGKCP01834 107 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 CHCHD7Q9BUK0 85 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 MRPL35Q9NZE8 188 aaKnown RBP12.82□□□□□ -0.36
VIM-201ENST00000224237 HHLA3Q9XRX5 114 aa12.82□□□□□ -0.36
VIM-201ENST00000224237 STPG4Q8N801 248 aa12.81□□□□□ -0.36
VIM-201ENST00000224237 RETNQ9HD89 108 aa12.81□□□□□ -0.36
VIM-201ENST00000224237 SPART-AS1P0CW21 52 aa12.8□□□□□ -0.36
VIM-201ENST00000224237 HINT1P49773 126 aaPredicted RBP12.8□□□□□ -0.36
VIM-201ENST00000224237 DAD1P61803 113 aa12.8□□□□□ -0.36
VIM-201ENST00000224237 CHTOPQ9Y3Y2 248 aaKnown RBP12.8□□□□□ -0.36
VIM-201ENST00000224237 PYGO1Q9Y3Y4 419 aa12.8□□□□□ -0.36
VIM-201ENST00000224237 PLNP26678 52 aa12.8□□□□□ -0.36
VIM-201ENST00000224237 PMVKQ15126 192 aa12.8□□□□□ -0.36
VIM-201ENST00000224237 LOC100131303A0A0U1RQF7 123 aa12.79□□□□□ -0.36
VIM-201ENST00000224237 TEX48A0A1B0GUV7 120 aa12.79□□□□□ -0.36
VIM-201ENST00000224237 PRSS29PA6NIE9 313 aa12.79□□□□□ -0.36
VIM-201ENST00000224237 ANKRD39Q53RE8 183 aa12.79□□□□□ -0.36
VIM-201ENST00000224237 CELA1Q9UNI1 258 aa12.79□□□□□ -0.36
VIM-201ENST00000224237 NPSP0C0P6 89 aa12.78□□□□□ -0.36
VIM-201ENST00000224237 PRO0255Q9UI72 69 aa12.78□□□□□ -0.36
VIM-201ENST00000224237 CRYBA4P53673 196 aa12.78□□□□□ -0.36
VIM-201ENST00000224237 PAPPA-AS1Q5QFB9 102 aa12.78□□□□□ -0.36
VIM-201ENST00000224237 GTSF1LQ9H1H1 148 aa12.78□□□□□ -0.36
VIM-201ENST00000224237 SPANXA1Q9NS26 97 aa12.78□□□□□ -0.36
VIM-201ENST00000224237 DLEU1O43261 78 aa12.77□□□□□ -0.37
VIM-201ENST00000224237 LINC00694P0DN24 101 aa12.77□□□□□ -0.37
VIM-201ENST00000224237 BOD1L2Q8IYS8 172 aa12.77□□□□□ -0.37
VIM-201ENST00000224237 IGLV4-3A0A075B6K6 122 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.76□□□□□ -0.37
VIM-201ENST00000224237 IGKV2-29A2NJV5 120 aaPredicted RBP12.76□□□□□ -0.37
VIM-201ENST00000224237 CST9LQ9H4G1 147 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 UBE2D4Q9Y2X8 147 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 SIVA1O15304 175 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 ATP5G1P05496 136 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 FGF6P10767 208 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 MPV17L2Q567V2 206 aa12.76□□□□□ -0.37
VIM-201ENST00000224237 KPRPQ5T749 579 aaPredicted RBP12.76□□□□□ -0.37
VIM-201ENST00000224237 NTM-AS1Q6ZSK4 140 aa12.75□□□□□ -0.37
VIM-201ENST00000224237 TENM3Q9P273 2699 aa12.75□□□□□ -0.37
VIM-201ENST00000224237 K7EIL1 84 aa12.74□□□□□ -0.37
VIM-201ENST00000224237 GYPEP15421 78 aa12.74□□□□□ -0.37
VIM-201ENST00000224237 ZNF25P17030 456 aaPredicted RBP12.74□□□□□ -0.37
VIM-201ENST00000224237 ZC2HC1BQ5TFG8 222 aa12.74□□□□□ -0.37
VIM-201ENST00000224237 OPRPNQ99935 248 aaPredicted RBP12.74□□□□□ -0.37
VIM-201ENST00000224237 TP73-AS1Q9UF72 201 aa12.74□□□□□ -0.37
VIM-201ENST00000224237 C2orf91Q6ZV80 131 aa12.74□□□□□ -0.37
VIM-201ENST00000224237 VCX2Q9H322 139 aa12.74□□□□□ -0.37
VIM-201ENST00000224237 C11orf68Q9H3H3 251 aaKnown RBP12.74□□□□□ -0.37
VIM-201ENST00000224237 BVES-AS1Q5T3Y7 98 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms