RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CLPSL1A2RUU4 121 aa10.97□□□□□ -0.65
PTPRA-201ENST00000216877 IGLV1-47P01700 117 aa10.97□□□□□ -0.65
PTPRA-201ENST00000216877 A0A0U1RQV1 116 aa10.96□□□□□ -0.65
PTPRA-201ENST00000216877 FAM19A4Q96LR4 140 aa10.96□□□□□ -0.65
PTPRA-201ENST00000216877 NUP37Q8NFH4 326 aa10.96□□□□□ -0.65
PTPRA-201ENST00000216877 WFDC11Q8NEX6 87 aa10.96□□□□□ -0.66
PTPRA-201ENST00000216877 TRBV7-1A0A0A6YYK4 115 aa10.95□□□□□ -0.66
PTPRA-201ENST00000216877 TINCRA0A1B0GVN0 87 aa10.95□□□□□ -0.66
PTPRA-201ENST00000216877 VMO1Q7Z5L0 202 aa10.95□□□□□ -0.66
PTPRA-201ENST00000216877 C8orf31Q8N9H6 132 aa10.95□□□□□ -0.66
PTPRA-201ENST00000216877 CRYGAP11844 174 aa10.95□□□□□ -0.66
PTPRA-201ENST00000216877 ATP5G1P05496 136 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 RPL35AP18077 110 aaKnown RBP10.94□□□□□ -0.66
PTPRA-201ENST00000216877 TMEM258P61165 79 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 TMEM61Q8N0U2 210 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 WNK1Q9H4A3 2382 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 C14orf132Q9NPU4 83 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 PYGO1Q9Y3Y4 419 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.94□□□□□ -0.66
PTPRA-201ENST00000216877 G3V318 75 aa10.94□□□□□ -0.66
PTPRA-201ENST00000216877 IGHV4-4A0A075B6R2 117 aa10.93□□□□□ -0.66
PTPRA-201ENST00000216877 RPS28P62857 69 aaKnown RBP10.93□□□□□ -0.66
PTPRA-201ENST00000216877 RPL18AQ02543 176 aaKnown RBP10.93□□□□□ -0.66
PTPRA-201ENST00000216877 WIPF1O43516 503 aa10.93□□□□□ -0.66
PTPRA-201ENST00000216877 RNF223E7ERA6 249 aa10.93□□□□□ -0.66
PTPRA-201ENST00000216877 MIAQ16674 131 aa10.93□□□□□ -0.66
PTPRA-201ENST00000216877 OXTP01178 125 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 IGHV3OR16-10A0A075B7F0 116 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 J3QLI3 93 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 DGAT2L7PQ6IED9 249 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 ZNF292O60281 2723 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 PFN2P35080 140 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 POLR2KP53803 58 aaKnown RBP10.92□□□□□ -0.66
PTPRA-201ENST00000216877 SERP2Q8N6R1 65 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 C20orf173Q96LM9 149 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 KLK9Q9UKQ9 250 aa10.92□□□□□ -0.66
PTPRA-201ENST00000216877 RNASE1P07998 156 aaKnown RBP10.91□□□□□ -0.66
PTPRA-201ENST00000216877 C9orf47Q6ZRZ4 202 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 C20orf197Q8N268 126 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 TMEM243Q9BU79 118 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 IGHG3P01860 377 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 INAFM2P0DMQ5 153 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 UCNP55089 124 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 FAM215AQ9Y5M1 114 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 SEM1Q6ZVN7 128 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 LY6G5BQ8NDX9 201 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 WFDC9Q8NEX5 89 aa10.91□□□□□ -0.66
PTPRA-201ENST00000216877 RNASE6Q93091 150 aaKnown RBP10.91□□□□□ -0.66
PTPRA-201ENST00000216877 ABCA12Q86UK0 2595 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 USP17L23D6RBM5 183 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 RNASE3P12724 160 aaKnown RBP10.9□□□□□ -0.66
PTPRA-201ENST00000216877 PKD1L2Q7Z442 2459 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 TRAV23DV6A0A075B6W5 121 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 GRNP28799 593 aaKnown RBP10.9□□□□□ -0.66
PTPRA-201ENST00000216877 NBL1P41271 181 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 ZFAND2AQ8N6M9 145 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 C2orf48Q96LS8 159 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 AKAP13Q12802 2813 aa10.9□□□□□ -0.66
PTPRA-201ENST00000216877 FAM223AQ8IWN6 122 aa10.89□□□□□ -0.67
PTPRA-201ENST00000216877 MBD3L2Q8NHZ7 208 aaPredicted RBP10.89□□□□□ -0.67
PTPRA-201ENST00000216877 IGLV4-3A0A075B6K6 122 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 TRAV12-2A0A075B6T6 113 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 IGHV3-11P01762 117 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 RNF5Q99942 180 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 COX7A2LO14548 114 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 SPANXDQ9BXN6 97 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 JMJD1CQ15652 2540 aa10.88□□□□□ -0.67
PTPRA-201ENST00000216877 DCANP1Q8TF63 244 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 KNCNA6PVL3 124 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 C20orf203Q8NBC4 194 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 MRAPQ8TCY5 172 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 ZNF462Q96JM2 2506 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 RELNP78509 3460 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 IGHV1-58A0A0C4DH39 117 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 Q8N2B8 174 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 Q9H8V8 135 aa10.87□□□□□ -0.67
PTPRA-201ENST00000216877 LINC00336Q6ZUF6 198 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 PRIMA1Q86XR5 153 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 BRK1Q8WUW1 75 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 MUC4Q99102 2169 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 K7ENP7 123 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 CXCL5P42830 114 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 ZNF415Q09FC8 603 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 DEFB121Q5J5C9 76 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 C9orf139Q6ZV77 190 aa10.86□□□□□ -0.67
PTPRA-201ENST00000216877 IGHV3-38A0A0C4DH36 116 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 ATP6V0E1O15342 81 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 GHRHP01286 108 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 ZFAND3Q9H8U3 227 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.85□□□□□ -0.67
PTPRA-201ENST00000216877 IGKV2-29A2NJV5 120 aaPredicted RBP10.85□□□□□ -0.67
PTPRA-201ENST00000216877 C5orf38Q86SI9 138 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 SPANXCQ9NY87 97 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 HILS1P60008 231 aa10.85□□□□□ -0.67
PTPRA-201ENST00000216877 LITAFQ99732 161 aa10.84□□□□□ -0.67
PTPRA-201ENST00000216877 RBMY1BA6NDE4 496 aaKnown RBP10.83□□□□□ -0.68
PTPRA-201ENST00000216877 RBMY1EA6NEQ0 496 aaKnown RBP10.83□□□□□ -0.68
PTPRA-201ENST00000216877 RBMY1DP0C7P1 496 aaKnown RBP10.83□□□□□ -0.68
PTPRA-201ENST00000216877 RBMY1A1P0DJD3 496 aaKnown RBP10.83□□□□□ -0.68
PTPRA-201ENST00000216877 RBMY1CP0DJD4 496 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms