RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 TWIST1Q15672 202 aa14.23□□□□□ -0.13
VTI1B-201ENST00000216456 C9orf163Q8N9P6 203 aa14.23□□□□□ -0.13
VTI1B-201ENST00000216456 GATD1Q8NB37 220 aa14.23□□□□□ -0.13
VTI1B-201ENST00000216456 HNRNPA3P51991 378 aaKnown RBP14.22□□□□□ -0.13
VTI1B-201ENST00000216456 GTSF1Q8WW33 167 aa14.22□□□□□ -0.13
VTI1B-201ENST00000216456 RPL39LQ96EH5 51 aaKnown RBP14.22□□□□□ -0.13
VTI1B-201ENST00000216456 RPP21Q9H633 154 aaKnown RBP14.22□□□□□ -0.13
VTI1B-201ENST00000216456 SLPIP03973 132 aa14.2□□□□□ -0.14
VTI1B-201ENST00000216456 DGAT2L7PQ6IED9 249 aa14.2□□□□□ -0.14
VTI1B-201ENST00000216456 SDIM1Q6ZPB5 146 aa14.2□□□□□ -0.14
VTI1B-201ENST00000216456 CNFNQ9BYD5 112 aa14.2□□□□□ -0.14
VTI1B-201ENST00000216456 hCG_2014768A0A024R1R8 64 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 A0A1B0GUV1 79 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 AMTP48728 403 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 ALKAL2Q6UX46 152 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 Q6ZNX1 250 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 PGLYRP4Q96LB8 373 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 BIN3Q9NQY0 253 aa14.19□□□□□ -0.14
VTI1B-201ENST00000216456 IGKV3OR2-268A0A0C4DH90 116 aa14.18□□□□□ -0.14
VTI1B-201ENST00000216456 hDV102S1A0JD36 115 aa14.18□□□□□ -0.14
VTI1B-201ENST00000216456 WDR73Q6P4I2 378 aa14.18□□□□□ -0.14
VTI1B-201ENST00000216456 RPL37AP61513 92 aaKnown RBP14.17□□□□□ -0.14
VTI1B-201ENST00000216456 COTL1Q14019 142 aa14.17□□□□□ -0.14
VTI1B-201ENST00000216456 UBE2L6O14933 153 aa14.16□□□□□ -0.14
VTI1B-201ENST00000216456 GAS8-AS1O95177 125 aa14.16□□□□□ -0.14
VTI1B-201ENST00000216456 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.15□□□□□ -0.14
VTI1B-201ENST00000216456 IGKV2-29A2NJV5 120 aaPredicted RBP14.15□□□□□ -0.14
VTI1B-201ENST00000216456 CHTF8P0CG12 524 aa14.15□□□□□ -0.14
VTI1B-201ENST00000216456 CEBPGP53567 150 aa14.15□□□□□ -0.14
VTI1B-201ENST00000216456 TRAV8-4A0A0B4J246 113 aa14.14□□□□□ -0.15
VTI1B-201ENST00000216456 GAGE12HA6NDE8 117 aa14.13□□□□□ -0.15
VTI1B-201ENST00000216456 GATCO43716 136 aaKnown RBP14.13□□□□□ -0.15
VTI1B-201ENST00000216456 TAGLN2P37802 199 aaKnown RBP14.13□□□□□ -0.15
VTI1B-201ENST00000216456 CNBPP62633 177 aaKnown RBP14.13□□□□□ -0.15
VTI1B-201ENST00000216456 CLRN3Q8NCR9 226 aa14.13□□□□□ -0.15
VTI1B-201ENST00000216456 AKAP14Q86UN6 197 aa14.12□□□□□ -0.15
VTI1B-201ENST00000216456 C15orf56Q8N910 161 aa14.12□□□□□ -0.15
VTI1B-201ENST00000216456 HMCN2Q8NDA2 5059 aa14.1□□□□□ -0.15
VTI1B-201ENST00000216456 HIGD2BQ4VC39 106 aa14.1□□□□□ -0.15
VTI1B-201ENST00000216456 SDHAF1A6NFY7 115 aa14.09□□□□□ -0.15
VTI1B-201ENST00000216456 TMEM250H0YL14 139 aa14.09□□□□□ -0.15
VTI1B-201ENST00000216456 RNASEKQ6P5S7 137 aaKnown RBP14.09□□□□□ -0.15
VTI1B-201ENST00000216456 LYPD6BQ8NI32 183 aa14.09□□□□□ -0.15
VTI1B-201ENST00000216456 BLOC1S1P78537 153 aa14.08□□□□□ -0.16
VTI1B-201ENST00000216456 CIRBPQ14011 172 aaKnown RBP14.08□□□□□ -0.16
VTI1B-201ENST00000216456 FAM231DQ6ZW35 169 aa14.08□□□□□ -0.16
VTI1B-201ENST00000216456 FAM231BA6NCW3 169 aa14.07□□□□□ -0.16
VTI1B-201ENST00000216456 AMMECR1LQ6DCA0 310 aa14.07□□□□□ -0.16
VTI1B-201ENST00000216456 CHCHD10Q8WYQ3 142 aaPredicted RBP14.07□□□□□ -0.16
VTI1B-201ENST00000216456 AP5S1Q9NUS5 200 aa14.07□□□□□ -0.16
VTI1B-201ENST00000216456 IGHV3-64A0A075B6Q5 118 aa14.06□□□□□ -0.16
VTI1B-201ENST00000216456 A0A087WYN8 130 aa14.06□□□□□ -0.16
VTI1B-201ENST00000216456 OXTP01178 125 aa14.06□□□□□ -0.16
VTI1B-201ENST00000216456 APCSP02743 223 aa14.06□□□□□ -0.16
VTI1B-201ENST00000216456 FGF6P10767 208 aa14.06□□□□□ -0.16
VTI1B-201ENST00000216456 SMIM15Q7Z3B0 74 aa14.06□□□□□ -0.16
VTI1B-201ENST00000216456 A8MWL6 223 aa14.05□□□□□ -0.16
VTI1B-201ENST00000216456 DPH3Q96FX2 82 aa14.05□□□□□ -0.16
VTI1B-201ENST00000216456 RPS10P46783 165 aaKnown RBP14.04□□□□□ -0.16
VTI1B-201ENST00000216456 SPACA4Q8TDM5 124 aa14.04□□□□□ -0.16
VTI1B-201ENST00000216456 SMIM7Q9BQ49 75 aa14.04□□□□□ -0.16
VTI1B-201ENST00000216456 TMEM242Q9NWH2 141 aa14.04□□□□□ -0.16
VTI1B-201ENST00000216456 NCR2O95944 276 aa14.03□□□□□ -0.16
VTI1B-201ENST00000216456 TSHBP01222 138 aa14.03□□□□□ -0.16
VTI1B-201ENST00000216456 COX6A2Q02221 97 aa14.03□□□□□ -0.16
VTI1B-201ENST00000216456 LINC01551Q86U37 167 aa14.03□□□□□ -0.16
VTI1B-201ENST00000216456 RNF185Q96GF1 192 aa14.03□□□□□ -0.16
VTI1B-201ENST00000216456 EIF5A2Q9GZV4 153 aaKnown RBP14.03□□□□□ -0.16
VTI1B-201ENST00000216456 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.02□□□□□ -0.17
VTI1B-201ENST00000216456 HIGD1CA8MV81 97 aa14.02□□□□□ -0.17
VTI1B-201ENST00000216456 PMCHP20382 165 aa14.02□□□□□ -0.17
VTI1B-201ENST00000216456 PRSS3P2Q8NHM4 247 aa14.02□□□□□ -0.17
VTI1B-201ENST00000216456 SMKR1H3BMG3 65 aa14.01□□□□□ -0.17
VTI1B-201ENST00000216456 I3L3M4 83 aa14.01□□□□□ -0.17
VTI1B-201ENST00000216456 SRP19P09132 144 aaKnown RBP14.01□□□□□ -0.17
VTI1B-201ENST00000216456 FOXI1Q12951 378 aa14.01□□□□□ -0.17
VTI1B-201ENST00000216456 CT83Q5H943 113 aa14.01□□□□□ -0.17
VTI1B-201ENST00000216456 LINC00526Q96FQ7 95 aa14.01□□□□□ -0.17
VTI1B-201ENST00000216456 TRBV6-5A0A0K0K1A5 114 aa14□□□□□ -0.17
VTI1B-201ENST00000216456 ESDP10768 282 aa14□□□□□ -0.17
VTI1B-201ENST00000216456 XCL1P47992 114 aa14□□□□□ -0.17
VTI1B-201ENST00000216456 AMN1Q8IY45 258 aa14□□□□□ -0.17
VTI1B-201ENST00000216456 IGKV2-24A0A0C4DH68 120 aa13.99□□□□□ -0.17
VTI1B-201ENST00000216456 ZNF727A8MUV8 499 aa13.99□□□□□ -0.17
VTI1B-201ENST00000216456 TEX261Q6UWH6 196 aa13.99□□□□□ -0.17
VTI1B-201ENST00000216456 TSKUQ8WUA8 353 aa13.99□□□□□ -0.17
VTI1B-201ENST00000216456 FAM210AQ96ND0 272 aa13.99□□□□□ -0.17
VTI1B-201ENST00000216456 ST20Q9HBF5 79 aa13.99□□□□□ -0.17
VTI1B-201ENST00000216456 A0A1B0GUT8 65 aa13.98□□□□□ -0.17
VTI1B-201ENST00000216456 A0A1B0GVG6 124 aa13.98□□□□□ -0.17
VTI1B-201ENST00000216456 H7C423 109 aa13.98□□□□□ -0.17
VTI1B-201ENST00000216456 RAB4AP20338 218 aa13.98□□□□□ -0.17
VTI1B-201ENST00000216456 CCL25O15444 150 aa13.97□□□□□ -0.17
VTI1B-201ENST00000216456 CFAP161Q6P656 301 aa13.97□□□□□ -0.17
VTI1B-201ENST00000216456 OR5A1Q8NGJ0 315 aa13.97□□□□□ -0.17
VTI1B-201ENST00000216456 BORCS7Q96B45 105 aa13.97□□□□□ -0.17
VTI1B-201ENST00000216456 TMEM191AQ9H0A3 160 aa13.97□□□□□ -0.17
VTI1B-201ENST00000216456 V9GYV3 84 aa13.97□□□□□ -0.17
VTI1B-201ENST00000216456 GVQW2A0A096LPI5 108 aaPredicted RBP13.96□□□□□ -0.17
VTI1B-201ENST00000216456 LINC00959A0A1B0GUT2 108 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms