RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 Q6ZR03 302 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 C10orf105Q8TEF2 133 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 COL4A5P29400 1685 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 LYRM9A8MSI8 78 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 FOXI1Q12951 378 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 POLR3KQ9Y2Y1 108 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-209ENST00000635750 TRAV26-1A0A087WT03 109 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 C15orf65H3BRN8 121 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 LECT2O14960 151 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 MED14OSP0DP75 135 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 UBE2D2P62837 147 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 Q8N1Y9 231 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 KIAA1549LQ6ZVL6 1849 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 WIPF3A6NGB9 483 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 BLCAPP62952 87 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 WI2-2373I1.2A0A1W2PRP0 233 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 LY6G6CO95867 125 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 LTBP1Q14766 1721 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 PTPRQQ9UMZ3 2332 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 J3KT08 172 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 PIP4P1Q86T03 277 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 FAM236AA0A1B0GUQ0 79 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 FAM236BA0A1B0GV22 79 aa4.3□□□□□ -1.72
SCN1A-209ENST00000635750 A0A096LNI7 61 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 DNAJC9-AS1A6NH13 148 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-209ENST00000635750 LYPD6BQ8NI32 183 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 V9GYY9 64 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 TEX49A0A1B0GTD5 131 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 FSHBP01225 129 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 WFDC10BQ8IUB3 73 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 MIR7-3HGQ8N6C7 128 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 TCL1BO95988 128 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 GATA1P15976 413 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-209ENST00000635750 DIAPH2-AS1Q14236 149 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 SLX1AQ9BQ83 275 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 ZNF581Q9P0T4 197 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 IGHV7-81A0A0B4J1V7 117 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 TRBV10-1A0A0K0K1A3 114 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 PCDH15Q96QU1 1955 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 REG3AQ06141 175 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 LINC00322Q6ZN03 302 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-209ENST00000635750 LINC00474Q9P2X8 69 aa4.29□□□□□ -1.72
SCN1A-209ENST00000635750 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-209ENST00000635750 FAM236DA0A1B0GTK5 79 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 FAM236CP0DP71 79 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 IGLL1P15814 213 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 DAZAP2Q15038 168 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-209ENST00000635750 LINC00269Q8N2A0 174 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 FAM215AQ9Y5M1 114 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 SPATA12Q7Z6I5 190 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 C9orf85Q96MD7 179 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 AGRNO00468 2067 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 H7C423 109 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 MRPL55Q7Z7F7 128 aaKnown RBP4.28□□□□□ -1.72
SCN1A-209ENST00000635750 DAND5Q8N907 189 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 CRYGBP07316 175 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 SPG11Q96JI7 2443 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 TRAV10A0A0B4J240 114 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 TRBV6-1A0A0K0K1D8 114 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 SPINK6Q6UWN8 80 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 WFDC11Q8NEX6 87 aa4.28□□□□□ -1.72
SCN1A-209ENST00000635750 B5MCH6 92 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 Q6ZVQ6 151 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 TOMM6Q96B49 74 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 HIVEP2P31629 2446 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 P0DMU3 169 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 FAM231AP0DMU4 169 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 FAM231CP0DMU5 169 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 IGLV11-55A0A075B6I3 123 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 GRNP28799 593 aaKnown RBP4.27□□□□□ -1.73
SCN1A-209ENST00000635750 FAM19A5Q7Z5A7 132 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-209ENST00000635750 NRGNQ92686 78 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 A0A0J9YXV3 536 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 NOTCH4Q99466 2003 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 NDUFS6O75380 124 aaKnown RBP4.27□□□□□ -1.73
SCN1A-209ENST00000635750 MIFP14174 115 aa4.27□□□□□ -1.73
SCN1A-209ENST00000635750 C11orf86A6NJI1 115 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 CTSZQ9UBR2 303 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 NUPR2A6NF83 97 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 LRRC75A-AS1Q8N1F1 130 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 ZNF747Q9BV97 191 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 OTOGLQ3ZCN5 2332 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 RAI1Q7Z5J4 1906 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-209ENST00000635750 IGF2-ASQ6U949 168 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 HRCT1Q6UXD1 115 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 ZFAND2AQ8N6M9 145 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 MPLKIPQ8TAP9 179 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 CSPG4Q6UVK1 2322 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 M0R2N4 97 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 MAP6D1Q9H9H5 199 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 TRAV23DV6A0A075B6W5 121 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 SERP2Q8N6R1 65 aa4.26□□□□□ -1.73
SCN1A-209ENST00000635750 RPL39P62891 51 aaKnown RBP4.26□□□□□ -1.73
SCN1A-209ENST00000635750 LOXL1Q08397 574 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-209ENST00000635750 I3L2K1 104 aa4.25□□□□□ -1.73
SCN1A-209ENST00000635750 FAM222AQ5U5X8 452 aa4.25□□□□□ -1.73
SCN1A-209ENST00000635750 IGLV2-18A0A075B6J9 118 aa4.25□□□□□ -1.73
SCN1A-209ENST00000635750 A0A0J9YWU9 116 aa4.25□□□□□ -1.73
SCN1A-209ENST00000635750 Q8N9L7 120 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms