RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 PGPEP1Q9NXJ5 209 aa9.5□□□□□ -0.89
PNKP-223ENST00000629179 GATCO43716 136 aaKnown RBP9.49□□□□□ -0.89
PNKP-223ENST00000629179 SRP19P09132 144 aaKnown RBP9.49□□□□□ -0.89
PNKP-223ENST00000629179 CTRLP40313 264 aa9.49□□□□□ -0.89
PNKP-223ENST00000629179 LAGE3Q14657 143 aa9.49□□□□□ -0.89
PNKP-223ENST00000629179 SUMO4Q6EEV6 95 aa9.49□□□□□ -0.89
PNKP-223ENST00000629179 WDR73Q6P4I2 378 aa9.49□□□□□ -0.89
PNKP-223ENST00000629179 SMIM7Q9BQ49 75 aa9.49□□□□□ -0.89
PNKP-223ENST00000629179 URGCP-MRPS24S4R325 110 aa9.49□□□□□ -0.89
PNKP-223ENST00000629179 TRBV6-8A0A0A6YYG3 113 aa9.48□□□□□ -0.89
PNKP-223ENST00000629179 LRCOL1A6NCL2 159 aa9.48□□□□□ -0.89
PNKP-223ENST00000629179 M0QY20 66 aa9.48□□□□□ -0.89
PNKP-223ENST00000629179 TRGC1P0CF51 173 aa9.48□□□□□ -0.89
PNKP-223ENST00000629179 GTSF1Q8WW33 167 aa9.48□□□□□ -0.89
PNKP-223ENST00000629179 ZNF727A8MUV8 499 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 NDUFS6O75380 124 aaKnown RBP9.47□□□□□ -0.89
PNKP-223ENST00000629179 CDK2AP2O75956 126 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 TWIST1Q15672 202 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 TEX261Q6UWH6 196 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 NTM-AS1Q6ZSK4 140 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 FAM231DQ6ZW35 169 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 DNAJC30Q96LL9 226 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 CNFNQ9BYD5 112 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 DPH3P1Q9H4G8 78 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 KLK12Q9UKR0 248 aa9.47□□□□□ -0.89
PNKP-223ENST00000629179 A0A087WX48 190 aa9.46□□□□□ -0.9
PNKP-223ENST00000629179 TRAV8-3A0A0A6YYJ7 113 aa9.46□□□□□ -0.9
PNKP-223ENST00000629179 TMEM262E9PQX1 116 aa9.46□□□□□ -0.9
PNKP-223ENST00000629179 H7C1H1 209 aa9.46□□□□□ -0.9
PNKP-223ENST00000629179 LINC01551Q86U37 167 aa9.46□□□□□ -0.9
PNKP-223ENST00000629179 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.46□□□□□ -0.9
PNKP-223ENST00000629179 TM2D2Q9BX73 214 aa9.46□□□□□ -0.9
PNKP-223ENST00000629179 A8MWL6 223 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 CDPF1Q6NVV7 123 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 RASL11AQ6T310 242 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 PGLYRP4Q96LB8 373 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 CHCHD5Q9BSY4 110 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 CHCHD7Q9BUK0 85 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 KRTAP17-1Q9BYP8 105 aa9.45□□□□□ -0.9
PNKP-223ENST00000629179 LRP1BQ9NZR2 4599 aa9.44□□□□□ -0.9
PNKP-223ENST00000629179 C9JQL5 133 aa9.44□□□□□ -0.9
PNKP-223ENST00000629179 FOXA3P55318 350 aaPredicted RBP9.44□□□□□ -0.9
PNKP-223ENST00000629179 KCNIP4Q6PIL6 250 aa9.44□□□□□ -0.9
PNKP-223ENST00000629179 UBE2WQ96B02 151 aa9.44□□□□□ -0.9
PNKP-223ENST00000629179 RAB14P61106 215 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 SRSF3P84103 164 aaKnown RBP9.43□□□□□ -0.9
PNKP-223ENST00000629179 WFDC2Q14508 124 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 MPV17L2Q567V2 206 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 TMEM97Q5BJF2 176 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 MAPKAPK5-AS1Q8N8E1 139 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 DEFB104AQ8WTQ1 72 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 NIT2Q9NQR4 276 aa9.43□□□□□ -0.9
PNKP-223ENST00000629179 IGKV2D-24A0A075B6R9 120 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 TRAV26-2A0A0B4J265 109 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 KRTAP10-1P60331 282 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 ELOBQ15370 118 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 TMEM241Q24JQ0 296 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 CT83Q5H943 113 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 ATRAIDQ6UW56 229 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 Q8N814 137 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 C15orf54Q8N8G6 183 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 GATD1Q8NB37 220 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 OSTCQ9NRP0 149 aa9.42□□□□□ -0.9
PNKP-223ENST00000629179 TRBV25-1A0A075B6N4 114 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 LECT2O14960 151 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 ANGP03950 147 aaKnown RBP9.41□□□□□ -0.9
PNKP-223ENST00000629179 GAGE6Q13070 117 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 PEA15Q15121 130 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 Q8N976 141 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 TSKUQ8WUA8 353 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 BAALCQ8WXS3 180 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 RMI2Q96E14 147 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 KRTAP4-5Q9BYR2 181 aa9.41□□□□□ -0.9
PNKP-223ENST00000629179 DNAH5Q8TE73 4624 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 RYR1P21817 5038 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 IGLV5-52A0A0A0MRZ9 124 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 IGHV1-24A0A0C4DH33 117 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 GCSHP23434 173 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 RPL23P62829 140 aaKnown RBP9.4□□□□□ -0.9
PNKP-223ENST00000629179 IQCJQ1A5X6 159 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 FAM74A3Q4VXF1 159 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 ENHOQ6UWT2 76 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 SMIM15Q7Z3B0 74 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 ISOC2Q96AB3 205 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 COX11Q9Y6N1 276 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 V9GYV3 84 aa9.4□□□□□ -0.9
PNKP-223ENST00000629179 HIGD1CA8MV81 97 aa9.39□□□□□ -0.91
PNKP-223ENST00000629179 PKIAP61925 76 aa9.39□□□□□ -0.91
PNKP-223ENST00000629179 RBX1P62877 108 aa9.39□□□□□ -0.91
PNKP-223ENST00000629179 Q0VG73 95 aa9.39□□□□□ -0.91
PNKP-223ENST00000629179 NTN5Q8WTR8 489 aaPredicted RBP9.39□□□□□ -0.91
PNKP-223ENST00000629179 RPL39LQ96EH5 51 aaKnown RBP9.39□□□□□ -0.91
PNKP-223ENST00000629179 GFRA4Q9GZZ7 299 aa9.39□□□□□ -0.91
PNKP-223ENST00000629179 HSPG2P98160 4391 aa9.39□□□□□ -0.91
PNKP-223ENST00000629179 A0A1B0GUT8 65 aa9.38□□□□□ -0.91
PNKP-223ENST00000629179 ADIRFQ15847 76 aa9.38□□□□□ -0.91
PNKP-223ENST00000629179 BORCS7Q96B45 105 aa9.38□□□□□ -0.91
PNKP-223ENST00000629179 NAT8Q9UHE5 227 aa9.38□□□□□ -0.91
PNKP-223ENST00000629179 FAM231BA6NCW3 169 aa9.37□□□□□ -0.91
PNKP-223ENST00000629179 CRPP02741 224 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms