RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 DEFB130BP0DP73 79 aa12.83□□□□□ -0.35
VRK3-225ENST00000601912 DEFB130AP0DP74 79 aa12.83□□□□□ -0.35
VRK3-225ENST00000601912 AKR1D1P51857 326 aa12.83□□□□□ -0.35
VRK3-225ENST00000601912 FAM222AQ5U5X8 452 aa12.83□□□□□ -0.35
VRK3-225ENST00000601912 LINC00612Q8N6U2 182 aa12.83□□□□□ -0.35
VRK3-225ENST00000601912 SMIM2Q9BVW6 85 aa12.83□□□□□ -0.35
VRK3-225ENST00000601912 NACAE9PAV3 2078 aa12.83□□□□□ -0.36
VRK3-225ENST00000601912 TRBV6-5A0A0K0K1A5 114 aa12.83□□□□□ -0.36
VRK3-225ENST00000601912 DEFB4AO15263 64 aa12.83□□□□□ -0.36
VRK3-225ENST00000601912 FAM19A2Q8N3H0 131 aa12.83□□□□□ -0.36
VRK3-225ENST00000601912 PACRGQ96M98 296 aaPredicted RBP12.83□□□□□ -0.36
VRK3-225ENST00000601912 C18orf15Q96N68 181 aa12.83□□□□□ -0.36
VRK3-225ENST00000601912 DNAH3Q8TD57 4116 aa12.82□□□□□ -0.36
VRK3-225ENST00000601912 DKK2Q9UBU2 259 aa12.82□□□□□ -0.36
VRK3-225ENST00000601912 NBEAL1Q6ZS30 2694 aa12.82□□□□□ -0.36
VRK3-225ENST00000601912 IGLV2-18A0A075B6J9 118 aa12.81□□□□□ -0.36
VRK3-225ENST00000601912 RPL32P62910 135 aaKnown RBP12.81□□□□□ -0.36
VRK3-225ENST00000601912 Q6ZSN1 163 aa12.81□□□□□ -0.36
VRK3-225ENST00000601912 RETNQ9HD89 108 aa12.81□□□□□ -0.36
VRK3-225ENST00000601912 LINC01546A6NGU7 62 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 VCYO14598 125 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 SPART-AS1P0CW21 52 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 TMEM70Q9BUB7 260 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 TNFRSF18Q9Y5U5 241 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 TRGV4A0A0C4DH28 118 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 IGHV1-24A0A0C4DH33 117 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 TEX48A0A1B0GUV7 120 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 SDHAF1A6NFY7 115 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 SBSPONQ8IVN8 264 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 OR10D4PQ8NGN7 298 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 DNAJC30Q96LL9 226 aa12.8□□□□□ -0.36
VRK3-225ENST00000601912 K7EMI3 77 aa12.79□□□□□ -0.36
VRK3-225ENST00000601912 POLR2KP53803 58 aaKnown RBP12.79□□□□□ -0.36
VRK3-225ENST00000601912 PMCHL1Q16048 86 aa12.79□□□□□ -0.36
VRK3-225ENST00000601912 P0DMU3 169 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 FAM231AP0DMU4 169 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 FAM231CP0DMU5 169 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 DAD1P61803 113 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 LAGE3Q14657 143 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 KIR2DL4Q99706 377 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 SPATA25Q9BR10 227 aa12.78□□□□□ -0.36
VRK3-225ENST00000601912 TRBV10-1A0A0K0K1A3 114 aa12.77□□□□□ -0.36
VRK3-225ENST00000601912 TRBV27A0A0K0K1C4 114 aa12.77□□□□□ -0.36
VRK3-225ENST00000601912 K7EQD1 137 aa12.77□□□□□ -0.36
VRK3-225ENST00000601912 TCAPO15273 167 aa12.77□□□□□ -0.36
VRK3-225ENST00000601912 TRBV6-4A0A1B0GX49 114 aa12.77□□□□□ -0.37
VRK3-225ENST00000601912 ORMDL2Q53FV1 153 aa12.77□□□□□ -0.37
VRK3-225ENST00000601912 SLC25A29Q8N8R3 303 aa12.77□□□□□ -0.37
VRK3-225ENST00000601912 NEXN-AS1Q8NBZ9 246 aa12.77□□□□□ -0.37
VRK3-225ENST00000601912 MRAPQ8TCY5 172 aa12.77□□□□□ -0.37
VRK3-225ENST00000601912 HBDP02042 147 aa12.76□□□□□ -0.37
VRK3-225ENST00000601912 FHL2Q14192 279 aa12.76□□□□□ -0.37
VRK3-225ENST00000601912 I3L3M4 83 aa12.75□□□□□ -0.37
VRK3-225ENST00000601912 LEPROTL1O95214 131 aa12.75□□□□□ -0.37
VRK3-225ENST00000601912 FCER1GP30273 86 aa12.75□□□□□ -0.37
VRK3-225ENST00000601912 NEGR1Q7Z3B1 354 aa12.75□□□□□ -0.37
VRK3-225ENST00000601912 C11orf68Q9H3H3 251 aaKnown RBP12.75□□□□□ -0.37
VRK3-225ENST00000601912 CELA1Q9UNI1 258 aa12.75□□□□□ -0.37
VRK3-225ENST00000601912 RPL36AP83881 106 aaKnown RBP12.74□□□□□ -0.37
VRK3-225ENST00000601912 RHOHQ15669 191 aa12.74□□□□□ -0.37
VRK3-225ENST00000601912 RPL36ALQ969Q0 106 aaKnown RBP12.74□□□□□ -0.37
VRK3-225ENST00000601912 TM2D3Q9BRN9 247 aa12.74□□□□□ -0.37
VRK3-225ENST00000601912 PRADC1Q9BSG0 188 aa12.74□□□□□ -0.37
VRK3-225ENST00000601912 TRBV7-3A0A075B6L6 115 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 NUDT3O95989 172 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 HSPB8Q9UJY1 196 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 HHLA3Q9XRX5 114 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 G0S2P27469 103 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 ZNRF2Q8NHG8 242 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 Q9UF83 564 aa12.73□□□□□ -0.37
VRK3-225ENST00000601912 A0A096LNJ9 63 aa12.72□□□□□ -0.37
VRK3-225ENST00000601912 ATP5G1P05496 136 aa12.72□□□□□ -0.37
VRK3-225ENST00000601912 BTF3P20290 206 aaKnown RBP12.72□□□□□ -0.37
VRK3-225ENST00000601912 ZMAT4Q9H898 229 aa12.71□□□□□ -0.37
VRK3-225ENST00000601912 PRO0255Q9UI72 69 aa12.7□□□□□ -0.38
VRK3-225ENST00000601912 KRTDAPP60985 99 aa12.7□□□□□ -0.38
VRK3-225ENST00000601912 A0A0J9YWU9 116 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 GAGE12JA6NER3 117 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 GAGE1Q13065 139 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 GAGE4Q13068 117 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 GAGE5Q13069 117 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 GAGE13Q4V321 117 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 DAZ4Q86SG3 579 aaKnown RBP12.69□□□□□ -0.38
VRK3-225ENST00000601912 DEFB104AQ8WTQ1 72 aa12.69□□□□□ -0.38
VRK3-225ENST00000601912 DAZ3Q9NR90 486 aaKnown RBP12.69□□□□□ -0.38
VRK3-225ENST00000601912 LINC01549A6NIU2 74 aa12.68□□□□□ -0.38
VRK3-225ENST00000601912 TSHBP01222 138 aa12.68□□□□□ -0.38
VRK3-225ENST00000601912 CRYBA4P53673 196 aa12.68□□□□□ -0.38
VRK3-225ENST00000601912 PHLDA1Q8WV24 401 aaPredicted RBP12.68□□□□□ -0.38
VRK3-225ENST00000601912 MAP1LC3CQ9BXW4 147 aa12.68□□□□□ -0.38
VRK3-225ENST00000601912 UBE2D3P61077 147 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 UBE2D2P62837 147 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 COTL1Q14019 142 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 F5H768 121 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 C3orf79P0CE67 100 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 JOSD1Q15040 202 aaPredicted RBP12.67□□□□□ -0.38
VRK3-225ENST00000601912 C12orf74Q32Q52 190 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 C2orf66Q6UXQ4 117 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 LINC00173Q6ZV60 143 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 TOMM6Q96B49 74 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms