RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 UBE2D2P62837 147 aa8.2□□□□□ -1.1
TRIM28-212ENST00000597995 C9orf62Q8N4C0 152 aa8.2□□□□□ -1.1
TRIM28-212ENST00000597995 DNAJC30Q96LL9 226 aa8.2□□□□□ -1.1
TRIM28-212ENST00000597995 KIF25-AS1Q9Y6Z4 181 aa8.2□□□□□ -1.1
TRIM28-212ENST00000597995 LRP1Q07954 4544 aaKnown RBP8.19□□□□□ -1.1
TRIM28-212ENST00000597995 TRBV10-1A0A0K0K1A3 114 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 RAB4BP61018 213 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 SSTP61278 116 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 MEF2BQ02080 365 aaPredicted RBP8.19□□□□□ -1.1
TRIM28-212ENST00000597995 LINC01620Q4KN68 170 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 NIT1Q86X76 327 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 OR10G8Q8NGN5 311 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 URGCP-MRPS24S4R325 110 aa8.19□□□□□ -1.1
TRIM28-212ENST00000597995 TRBV7-3A0A075B6L6 115 aa8.18□□□□□ -1.1
TRIM28-212ENST00000597995 IGLC6P0CF74 106 aa8.18□□□□□ -1.1
TRIM28-212ENST00000597995 BCL2P10415 239 aa8.18□□□□□ -1.1
TRIM28-212ENST00000597995 NEXN-AS1Q8NBZ9 246 aa8.18□□□□□ -1.1
TRIM28-212ENST00000597995 CHCHD7Q9BUK0 85 aa8.18□□□□□ -1.1
TRIM28-212ENST00000597995 IGKV2D-24A0A075B6R9 120 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 IFNA1P01562 189 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 RPL36AP83881 106 aaKnown RBP8.17□□□□□ -1.1
TRIM28-212ENST00000597995 ELOBQ15370 118 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 ZNF56Q15929 161 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 SPANXN1Q5VSR9 72 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 CIRBP-AS1Q8TBR5 109 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 RPL36ALQ969Q0 106 aaKnown RBP8.17□□□□□ -1.1
TRIM28-212ENST00000597995 MED9Q9NWA0 146 aa8.17□□□□□ -1.1
TRIM28-212ENST00000597995 PDE6DO43924 150 aa8.16□□□□□ -1.1
TRIM28-212ENST00000597995 GNG4P50150 75 aa8.16□□□□□ -1.1
TRIM28-212ENST00000597995 ATRAIDQ6UW56 229 aa8.16□□□□□ -1.1
TRIM28-212ENST00000597995 OR2D3Q8NGH3 330 aa8.16□□□□□ -1.1
TRIM28-212ENST00000597995 VAX2Q9UIW0 290 aa8.16□□□□□ -1.1
TRIM28-212ENST00000597995 KLK12Q9UKR0 248 aa8.16□□□□□ -1.1
TRIM28-212ENST00000597995 HMCN2Q8NDA2 5059 aa8.15□□□□□ -1.1
TRIM28-212ENST00000597995 Q0VG73 95 aa8.15□□□□□ -1.1
TRIM28-212ENST00000597995 FER1L6-AS1Q8NA97 138 aa8.15□□□□□ -1.1
TRIM28-212ENST00000597995 UBE2WQ96B02 151 aa8.15□□□□□ -1.1
TRIM28-212ENST00000597995 SMIM12Q96EX1 92 aa8.15□□□□□ -1.1
TRIM28-212ENST00000597995 FAT3Q8TDW7 4589 aa8.15□□□□□ -1.11
TRIM28-212ENST00000597995 A0A087WX48 190 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 TRBV6-8A0A0A6YYG3 113 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 C14orf177Q52M58 125 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 KCNIP4Q6PIL6 250 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 ALKAL2Q6UX46 152 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 NTM-AS1Q6ZSK4 140 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 DAZAP1Q96EP5 407 aaKnown RBP8.14□□□□□ -1.11
TRIM28-212ENST00000597995 TPPP3Q9BW30 176 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 PLA2G2DQ9UNK4 145 aa8.14□□□□□ -1.11
TRIM28-212ENST00000597995 A0A1B0GVG6 124 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 F5H697 171 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 K7EN84 100 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 RPS20P60866 119 aaKnown RBP8.13□□□□□ -1.11
TRIM28-212ENST00000597995 NUDT10Q8NFP7 164 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 LYPD6BQ8NI32 183 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 NUDT11Q96G61 164 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 AP1S3Q96PC3 154 aa8.13□□□□□ -1.11
TRIM28-212ENST00000597995 M0QY20 66 aa8.12□□□□□ -1.11
TRIM28-212ENST00000597995 P01737 135 aa8.12□□□□□ -1.11
TRIM28-212ENST00000597995 MPV17L2Q567V2 206 aa8.12□□□□□ -1.11
TRIM28-212ENST00000597995 LYZL1Q6UWQ5 148 aa8.12□□□□□ -1.11
TRIM28-212ENST00000597995 OCC1Q8TAD7 63 aa8.12□□□□□ -1.11
TRIM28-212ENST00000597995 SMIM17P0DL12 118 aa8.11□□□□□ -1.11
TRIM28-212ENST00000597995 TAGLN2P37802 199 aaKnown RBP8.11□□□□□ -1.11
TRIM28-212ENST00000597995 NKX2-5P52952 324 aaPredicted RBP8.11□□□□□ -1.11
TRIM28-212ENST00000597995 CACNG7P62955 275 aa8.11□□□□□ -1.11
TRIM28-212ENST00000597995 SUMO4Q6EEV6 95 aa8.11□□□□□ -1.11
TRIM28-212ENST00000597995 ENHOQ6UWT2 76 aa8.11□□□□□ -1.11
TRIM28-212ENST00000597995 C1orf43Q9BWL3 253 aa8.11□□□□□ -1.11
TRIM28-212ENST00000597995 RNASE7Q9H1E1 156 aaKnown RBP8.11□□□□□ -1.11
TRIM28-212ENST00000597995 TMEM262E9PQX1 116 aa8.1□□□□□ -1.11
TRIM28-212ENST00000597995 F2Z2F3 143 aa8.1□□□□□ -1.11
TRIM28-212ENST00000597995 MGPP08493 103 aa8.1□□□□□ -1.11
TRIM28-212ENST00000597995 NTF3P20783 257 aa8.1□□□□□ -1.11
TRIM28-212ENST00000597995 CTRLP40313 264 aa8.1□□□□□ -1.11
TRIM28-212ENST00000597995 RPL37AP61513 92 aaKnown RBP8.1□□□□□ -1.11
TRIM28-212ENST00000597995 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.1□□□□□ -1.11
TRIM28-212ENST00000597995 BIN3Q9NQY0 253 aa8.1□□□□□ -1.11
TRIM28-212ENST00000597995 XKRY2A2RUG3 117 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 PKIAP61925 76 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 BLOC1S1P78537 153 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 TMEM97Q5BJF2 176 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 DGAT2L7PQ6IED9 249 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 GTSF1Q8WW33 167 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 CNFNQ9BYD5 112 aa8.09□□□□□ -1.11
TRIM28-212ENST00000597995 TMEM250H0YL14 139 aa8.08□□□□□ -1.12
TRIM28-212ENST00000597995 CRPP02741 224 aa8.08□□□□□ -1.12
TRIM28-212ENST00000597995 WDR73Q6P4I2 378 aa8.08□□□□□ -1.12
TRIM28-212ENST00000597995 C15orf54Q8N8G6 183 aa8.08□□□□□ -1.12
TRIM28-212ENST00000597995 CHCHD5Q9BSY4 110 aa8.08□□□□□ -1.12
TRIM28-212ENST00000597995 RPP21Q9H633 154 aaKnown RBP8.08□□□□□ -1.12
TRIM28-212ENST00000597995 UBR4Q5T4S7 5183 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 USP17L23D6RBM5 183 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 ANGP03950 147 aaKnown RBP8.07□□□□□ -1.12
TRIM28-212ENST00000597995 CEBPGP53567 150 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 RBX1P62877 108 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 GAGE6Q13070 117 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 IQCJQ1A5X6 159 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 DPH3P1Q9H4G8 78 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 PKHD1L1Q86WI1 4243 aa8.07□□□□□ -1.12
TRIM28-212ENST00000597995 TRGC1P0CF51 173 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 223.8 ms