RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CXorf1O96002 111 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 CRIP1P50238 77 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 IQCJQ1A5X6 159 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 LINC01559Q495D7 138 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 COX8CQ7Z4L0 72 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 STPG4Q8N801 248 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 LYPD6BQ8NI32 183 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 WFDC1Q9HC57 220 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 IGHV1-24A0A0C4DH33 117 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 PEX7O00628 323 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 MPC2O95563 127 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 IFNA7P01567 189 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 RPS10P46783 165 aaKnown RBP6.3□□□□□ -1.4
TRIM28-210ENST00000597618 H2BFSP57053 126 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 MZT2BQ6NZ67 158 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 CFAP161Q6P656 301 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 ZFP30Q9Y2G7 519 aa6.3□□□□□ -1.4
TRIM28-210ENST00000597618 MUC21A0A0G2JKD1 596 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 KRTAP9-6A0A140TA67 174 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 F5H697 171 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 MBP02144 154 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 RAB5CP51148 216 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 SRSF9Q13242 221 aaKnown RBP eCLIP6.29□□□□□ -1.4
TRIM28-210ENST00000597618 Q6ZRP5 223 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 C20orf203Q8NBC4 194 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 PRSS3P2Q8NHM4 247 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 HIST1H2BAQ96A08 127 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 CCDC32Q9BV29 185 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 LINC00474Q9P2X8 69 aa6.29□□□□□ -1.4
TRIM28-210ENST00000597618 A0A1B0GUV1 79 aa6.28□□□□□ -1.4
TRIM28-210ENST00000597618 FAM231BA6NCW3 169 aa6.28□□□□□ -1.4
TRIM28-210ENST00000597618 ZNF674Q2M3X9 581 aa6.28□□□□□ -1.4
TRIM28-210ENST00000597618 C15orf56Q8N910 161 aa6.28□□□□□ -1.4
TRIM28-210ENST00000597618 OR10AG1Q8NH19 301 aa6.28□□□□□ -1.4
TRIM28-210ENST00000597618 PSMG3Q9BT73 122 aaPredicted RBP6.28□□□□□ -1.4
TRIM28-210ENST00000597618 ZNF471Q9BX82 626 aaPredicted RBP6.28□□□□□ -1.4
TRIM28-210ENST00000597618 ACTR3CQ9C0K3 210 aaPredicted RBP6.28□□□□□ -1.4
TRIM28-210ENST00000597618 PKIGQ9Y2B9 76 aa6.28□□□□□ -1.4
TRIM28-210ENST00000597618 A6NHS1 94 aa6.27□□□□□ -1.41
TRIM28-210ENST00000597618 H7C1H1 209 aa6.27□□□□□ -1.41
TRIM28-210ENST00000597618 UBE2G1P62253 170 aa6.27□□□□□ -1.41
TRIM28-210ENST00000597618 FMC1Q96HJ9 113 aa6.27□□□□□ -1.41
TRIM28-210ENST00000597618 AQP10Q96PS8 301 aa6.27□□□□□ -1.41
TRIM28-210ENST00000597618 NKX6-2Q9C056 277 aaPredicted RBP6.27□□□□□ -1.41
TRIM28-210ENST00000597618 IGLV4-60A0A075B6I1 120 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 A0A096LNI7 61 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 SULT1A2P50226 295 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 UBE2G2P60604 165 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 SERF2P84101 59 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 HIGD2BQ4VC39 106 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 ENKURQ8TC29 256 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 TMEM243Q9BU79 118 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 GFRA4Q9GZZ7 299 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 NDUFA13Q9P0J0 144 aa6.26□□□□□ -1.41
TRIM28-210ENST00000597618 GVQW2A0A096LPI5 108 aaPredicted RBP6.25□□□□□ -1.41
TRIM28-210ENST00000597618 GAGE12HA6NDE8 117 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 LTAP01374 205 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 CXCL1P09341 107 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 SMIM17P0DL12 118 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 ATP6V0CP27449 155 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 SPANXN1Q5VSR9 72 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 ZNF664Q8N3J9 261 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 AP1S3Q96PC3 154 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 TNFSF18Q9UNG2 199 aa6.25□□□□□ -1.41
TRIM28-210ENST00000597618 FAM74A7A6NL05 159 aa6.24□□□□□ -1.41
TRIM28-210ENST00000597618 UBE2L6O14933 153 aa6.24□□□□□ -1.41
TRIM28-210ENST00000597618 SNAI2O43623 268 aa6.24□□□□□ -1.41
TRIM28-210ENST00000597618 SSNA1O43805 119 aa6.24□□□□□ -1.41
TRIM28-210ENST00000597618 OR5AL1P0C617 328 aa6.24□□□□□ -1.41
TRIM28-210ENST00000597618 PSORS1C2Q9UIG4 136 aa6.24□□□□□ -1.41
TRIM28-210ENST00000597618 TRAV26-2A0A0B4J265 109 aa6.23□□□□□ -1.41
TRIM28-210ENST00000597618 LINC00299Q6ZSB3 139 aa6.23□□□□□ -1.41
TRIM28-210ENST00000597618 TCEAL7Q9BRU2 100 aa6.23□□□□□ -1.41
TRIM28-210ENST00000597618 SSBP4Q9BWG4 385 aaPredicted RBP6.23□□□□□ -1.41
TRIM28-210ENST00000597618 MUC21A0A140T8X8 626 aa6.22□□□□□ -1.41
TRIM28-210ENST00000597618 CTXND1A0A1B0GTU2 59 aa6.22□□□□□ -1.41
TRIM28-210ENST00000597618 INMT-MINDY4F8WBC2 141 aa6.22□□□□□ -1.41
TRIM28-210ENST00000597618 M0QY20 66 aa6.22□□□□□ -1.41
TRIM28-210ENST00000597618 CACNG7P62955 275 aa6.22□□□□□ -1.41
TRIM28-210ENST00000597618 INO80EQ8NBZ0 244 aaPredicted RBP6.22□□□□□ -1.41
TRIM28-210ENST00000597618 PGLYRP4Q96LB8 373 aa6.22□□□□□ -1.41
TRIM28-210ENST00000597618 IGKV3OR2-268A0A0C4DH90 116 aa6.21□□□□□ -1.42
TRIM28-210ENST00000597618 MGPP08493 103 aa6.21□□□□□ -1.42
TRIM28-210ENST00000597618 AKR1C3P42330 323 aa6.21□□□□□ -1.42
TRIM28-210ENST00000597618 NKX2-5P52952 324 aaPredicted RBP6.21□□□□□ -1.42
TRIM28-210ENST00000597618 DEFA3P59666 94 aa6.21□□□□□ -1.42
TRIM28-210ENST00000597618 ZNF726P1Q15940 193 aa6.21□□□□□ -1.42
TRIM28-210ENST00000597618 CHCHD10Q8WYQ3 142 aaPredicted RBP6.21□□□□□ -1.42
TRIM28-210ENST00000597618 MED28Q9H204 178 aa6.21□□□□□ -1.42
TRIM28-210ENST00000597618 AMTP48728 403 aa6.2□□□□□ -1.42
TRIM28-210ENST00000597618 SSTP61278 116 aa6.2□□□□□ -1.42
TRIM28-210ENST00000597618 SUMO4Q6EEV6 95 aa6.2□□□□□ -1.42
TRIM28-210ENST00000597618 STOML3Q8TAV4 291 aa6.2□□□□□ -1.42
TRIM28-210ENST00000597618 CARD19Q96LW7 228 aa6.2□□□□□ -1.42
TRIM28-210ENST00000597618 FHITP49789 147 aa6.19□□□□□ -1.42
TRIM28-210ENST00000597618 COTL1Q14019 142 aa6.19□□□□□ -1.42
TRIM28-210ENST00000597618 LCE2AQ5TA79 106 aaPredicted RBP6.19□□□□□ -1.42
TRIM28-210ENST00000597618 PRR26Q8N8Z3 221 aa6.19□□□□□ -1.42
TRIM28-210ENST00000597618 MT-ND6P03923 174 aa6.18□□□□□ -1.42
TRIM28-210ENST00000597618 S100A9P06702 114 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms