RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 CNBPP62633 177 aaKnown RBP11.21□□□□□ -0.61
CLK3-221ENST00000568139 CLPSL2Q6UWE3 100 aa11.21□□□□□ -0.61
CLK3-221ENST00000568139 TCEAL7Q9BRU2 100 aa11.21□□□□□ -0.61
CLK3-221ENST00000568139 ZNF471Q9BX82 626 aaPredicted RBP11.21□□□□□ -0.61
CLK3-221ENST00000568139 SNAI2O43623 268 aa11.2□□□□□ -0.62
CLK3-221ENST00000568139 SSBP4Q9BWG4 385 aaPredicted RBP11.2□□□□□ -0.62
CLK3-221ENST00000568139 GAGE6Q13070 117 aa11.19□□□□□ -0.62
CLK3-221ENST00000568139 AKR1C8PQ5T2L2 129 aa11.19□□□□□ -0.62
CLK3-221ENST00000568139 INO80EQ8NBZ0 244 aaPredicted RBP11.19□□□□□ -0.62
CLK3-221ENST00000568139 DERL1Q9BUN8 251 aa11.19□□□□□ -0.62
CLK3-221ENST00000568139 TRBV25-1A0A075B6N4 114 aa11.18□□□□□ -0.62
CLK3-221ENST00000568139 MAP1LC3B2A6NCE7 125 aa11.18□□□□□ -0.62
CLK3-221ENST00000568139 A6NHS1 94 aa11.18□□□□□ -0.62
CLK3-221ENST00000568139 AKR1C3P42330 323 aa11.18□□□□□ -0.62
CLK3-221ENST00000568139 RNF185Q96GF1 192 aa11.18□□□□□ -0.62
CLK3-221ENST00000568139 MAP1LC3BQ9GZQ8 125 aa11.18□□□□□ -0.62
CLK3-221ENST00000568139 A0A087WYN8 130 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 F5H697 171 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 OR5AL1P0C617 328 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 REG3AQ06141 175 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 IQCJQ1A5X6 159 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 CST9LP1Q5W188 147 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 MED28Q9H204 178 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 KIF25-AS1Q9Y6Z4 181 aa11.17□□□□□ -0.62
CLK3-221ENST00000568139 IGHV3-64A0A075B6Q5 118 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 MUC21A0A0G2JKD1 596 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 MUC21A0A140T8X8 626 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 hDV102S1A0JD36 115 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 SLPIP03973 132 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 SPANXN1Q5VSR9 72 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 MLST8Q9BVC4 326 aa11.16□□□□□ -0.62
CLK3-221ENST00000568139 IGLV10-54A0A075B6I4 117 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 TRAV8-4A0A0B4J246 113 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 P01737 135 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 GIPP09681 153 aaPredicted RBP11.15□□□□□ -0.62
CLK3-221ENST00000568139 C20orf203Q8NBC4 194 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 STOML3Q8TAV4 291 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 SPACA4Q8TDM5 124 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 DPH3Q96FX2 82 aa11.15□□□□□ -0.62
CLK3-221ENST00000568139 LRP2P98164 4655 aa11.14□□□□□ -0.63
CLK3-221ENST00000568139 TNXBP22105 4242 aa11.14□□□□□ -0.63
CLK3-221ENST00000568139 IGHV1-24A0A0C4DH33 117 aa11.14□□□□□ -0.63
CLK3-221ENST00000568139 S100A9P06702 114 aaKnown RBP11.14□□□□□ -0.63
CLK3-221ENST00000568139 CHTF8P0CG12 524 aa11.14□□□□□ -0.63
CLK3-221ENST00000568139 AP5S1Q9NUS5 200 aa11.14□□□□□ -0.63
CLK3-221ENST00000568139 FXYD6-FXYD2A0A087WZ82 144 aa11.13□□□□□ -0.63
CLK3-221ENST00000568139 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.13□□□□□ -0.63
CLK3-221ENST00000568139 A0A1B0GUV1 79 aa11.13□□□□□ -0.63
CLK3-221ENST00000568139 PAGE4O60829 102 aa11.13□□□□□ -0.63
CLK3-221ENST00000568139 PLAC8Q9NZF1 115 aa11.13□□□□□ -0.63
CLK3-221ENST00000568139 SMIM17P0DL12 118 aa11.12□□□□□ -0.63
CLK3-221ENST00000568139 GZMBP10144 247 aa11.12□□□□□ -0.63
CLK3-221ENST00000568139 BAGE2Q86Y30 109 aa11.12□□□□□ -0.63
CLK3-221ENST00000568139 IGLV4-60A0A075B6I1 120 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 M0QY20 66 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 PHOX2AO14813 284 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 SSTP61278 116 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 LINC01600Q96MT4 127 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 AP1S3Q96PC3 154 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 GFRA4Q9GZZ7 299 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 CYTL1Q9NRR1 136 aa11.11□□□□□ -0.63
CLK3-221ENST00000568139 SCO2A0A1W2PP80 73 aa11.1□□□□□ -0.63
CLK3-221ENST00000568139 C7orf33Q8WU49 177 aa11.09□□□□□ -0.63
CLK3-221ENST00000568139 TMEM243Q9BU79 118 aa11.09□□□□□ -0.63
CLK3-221ENST00000568139 DPH3P1Q9H4G8 78 aa11.09□□□□□ -0.63
CLK3-221ENST00000568139 H7C1H1 209 aa11.08□□□□□ -0.64
CLK3-221ENST00000568139 RAB5CP51148 216 aa11.08□□□□□ -0.64
CLK3-221ENST00000568139 RNF213Q63HN8 5207 aa11.08□□□□□ -0.64
CLK3-221ENST00000568139 SUMO4Q6EEV6 95 aa11.07□□□□□ -0.64
CLK3-221ENST00000568139 MBD3L1Q8WWY6 194 aa11.07□□□□□ -0.64
CLK3-221ENST00000568139 G3V3Q6 166 aa11.06□□□□□ -0.64
CLK3-221ENST00000568139 MGPP08493 103 aa11.06□□□□□ -0.64
CLK3-221ENST00000568139 TMUB2Q71RG4 321 aa11.06□□□□□ -0.64
CLK3-221ENST00000568139 C15orf56Q8N910 161 aa11.06□□□□□ -0.64
CLK3-221ENST00000568139 PGLYRP4Q96LB8 373 aa11.06□□□□□ -0.64
CLK3-221ENST00000568139 NKX2-5P52952 324 aaPredicted RBP11.05□□□□□ -0.64
CLK3-221ENST00000568139 COX6A2Q02221 97 aa11.05□□□□□ -0.64
CLK3-221ENST00000568139 WDR73Q6P4I2 378 aa11.05□□□□□ -0.64
CLK3-221ENST00000568139 SFT2D1Q8WV19 159 aa11.05□□□□□ -0.64
CLK3-221ENST00000568139 PFDN1O60925 122 aa11.04□□□□□ -0.64
CLK3-221ENST00000568139 NDUFS6O75380 124 aaKnown RBP11.04□□□□□ -0.64
CLK3-221ENST00000568139 IGLC6P0CF74 106 aa11.04□□□□□ -0.64
CLK3-221ENST00000568139 RPS10P46783 165 aaKnown RBP11.04□□□□□ -0.64
CLK3-221ENST00000568139 PRR3P79522 188 aaKnown RBP11.04□□□□□ -0.64
CLK3-221ENST00000568139 CFAP161Q6P656 301 aa11.04□□□□□ -0.64
CLK3-221ENST00000568139 RASL11AQ6T310 242 aa11.04□□□□□ -0.64
CLK3-221ENST00000568139 ODF1Q14990 250 aa11.03□□□□□ -0.64
CLK3-221ENST00000568139 MAJINQ3KP22 176 aa11.03□□□□□ -0.64
CLK3-221ENST00000568139 FER1L6-AS1Q8NA97 138 aa11.03□□□□□ -0.64
CLK3-221ENST00000568139 PRSS3P2Q8NHM4 247 aa11.03□□□□□ -0.64
CLK3-221ENST00000568139 GTSF1Q8WW33 167 aa11.03□□□□□ -0.64
CLK3-221ENST00000568139 A0A0J9YXV3 536 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 GAGE12HA6NDE8 117 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 UBE2L6O14933 153 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 ARPC5O15511 151 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 SULT1A2P50226 295 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 CACNG7P62955 275 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 FAM213BQ8TBF2 198 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 NIT2Q9NQR4 276 aa11.02□□□□□ -0.65
CLK3-221ENST00000568139 A0A1B0GV50 99 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms