RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ALKAL2Q6UX46 152 aa10.52□□□□□ -0.73
CLN3-229ENST00000567963 OR5AL1P0C617 328 aa10.51□□□□□ -0.73
CLN3-229ENST00000567963 RAB5CP51148 216 aa10.51□□□□□ -0.73
CLN3-229ENST00000567963 IFITM2Q01629 132 aa10.51□□□□□ -0.73
CLN3-229ENST00000567963 ENHOQ6UWT2 76 aa10.51□□□□□ -0.73
CLN3-229ENST00000567963 SCXQ7RTU7 201 aa10.51□□□□□ -0.73
CLN3-229ENST00000567963 MUC21A0A0G2JKD1 596 aa10.5□□□□□ -0.73
CLN3-229ENST00000567963 MUC21A0A140T8X8 626 aa10.5□□□□□ -0.73
CLN3-229ENST00000567963 H2AFB1P0C5Y9 115 aa10.5□□□□□ -0.73
CLN3-229ENST00000567963 SPANXN1Q5VSR9 72 aa10.5□□□□□ -0.73
CLN3-229ENST00000567963 MPV17L2Q567V2 206 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 C15orf54Q8N8G6 183 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 CHAC1Q9BUX1 264 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 C1orf43Q9BWL3 253 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 F5H697 171 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 J3QL48 77 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.49□□□□□ -0.73
CLN3-229ENST00000567963 DEFB104AQ8WTQ1 72 aa10.49□□□□□ -0.73
CLN3-229ENST00000567963 CRPP02741 224 aa10.48□□□□□ -0.73
CLN3-229ENST00000567963 ANGP03950 147 aaKnown RBP10.48□□□□□ -0.73
CLN3-229ENST00000567963 RPL35P42766 123 aaKnown RBP10.48□□□□□ -0.73
CLN3-229ENST00000567963 SSTP61278 116 aa10.48□□□□□ -0.73
CLN3-229ENST00000567963 KIF25-AS1Q9Y6Z4 181 aa10.48□□□□□ -0.73
CLN3-229ENST00000567963 C14orf177Q52M58 125 aa10.47□□□□□ -0.73
CLN3-229ENST00000567963 NTM-AS1Q6ZSK4 140 aa10.47□□□□□ -0.73
CLN3-229ENST00000567963 CIRBP-AS1Q8TBR5 109 aa10.47□□□□□ -0.73
CLN3-229ENST00000567963 CHCHD5Q9BSY4 110 aa10.47□□□□□ -0.73
CLN3-229ENST00000567963 VAX2Q9UIW0 290 aa10.47□□□□□ -0.73
CLN3-229ENST00000567963 KRTAP29-1A8MX34 341 aaPredicted RBP10.46□□□□□ -0.74
CLN3-229ENST00000567963 SMIM17P0DL12 118 aa10.46□□□□□ -0.74
CLN3-229ENST00000567963 PKIAP61925 76 aa10.46□□□□□ -0.74
CLN3-229ENST00000567963 TMEM97Q5BJF2 176 aa10.46□□□□□ -0.74
CLN3-229ENST00000567963 DERL1Q9BUN8 251 aa10.46□□□□□ -0.74
CLN3-229ENST00000567963 TRAV1-1A0A0B4J248 108 aa10.45□□□□□ -0.74
CLN3-229ENST00000567963 CCL20P78556 96 aa10.45□□□□□ -0.74
CLN3-229ENST00000567963 MIAQ16674 131 aa10.45□□□□□ -0.74
CLN3-229ENST00000567963 KRTAP10-4P60372 401 aaPredicted RBP10.44□□□□□ -0.74
CLN3-229ENST00000567963 LYPD6BQ8NI32 183 aa10.44□□□□□ -0.74
CLN3-229ENST00000567963 AP1S3Q96PC3 154 aa10.44□□□□□ -0.74
CLN3-229ENST00000567963 MANBALQ9NQG1 85 aa10.44□□□□□ -0.74
CLN3-229ENST00000567963 GNG13Q9P2W3 67 aa10.44□□□□□ -0.74
CLN3-229ENST00000567963 BLOC1S1P78537 153 aa10.43□□□□□ -0.74
CLN3-229ENST00000567963 C11orf52Q96A22 123 aa10.43□□□□□ -0.74
CLN3-229ENST00000567963 PRR34Q9NV39 138 aa10.43□□□□□ -0.74
CLN3-229ENST00000567963 USP17L23D6RBM5 183 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 IGLV2-8P01709 118 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 HLA-DQA1P01909 254 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 GZMBP10144 247 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 RBX1P62877 108 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 TRBV25-1A0A075B6N4 114 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 M0QY20 66 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 IGLC6P0CF74 106 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 GAGE6Q13070 117 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 CENPWQ5EE01 88 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 LINC00269Q8N2A0 174 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 FER1L6-AS1Q8NA97 138 aa10.42□□□□□ -0.74
CLN3-229ENST00000567963 DAZAP1Q96EP5 407 aaKnown RBP10.42□□□□□ -0.74
CLN3-229ENST00000567963 C19orf71A6NCJ1 209 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 PRSS1P07477 247 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 RPS20P60866 119 aaKnown RBP10.41□□□□□ -0.74
CLN3-229ENST00000567963 IQCJQ1A5X6 159 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 CLLU1Q5K131 121 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 DGAT2L7PQ6IED9 249 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 OR2D3Q8NGH3 330 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 TPPP3Q9BW30 176 aa10.41□□□□□ -0.74
CLN3-229ENST00000567963 LRP1Q07954 4544 aaKnown RBP10.41□□□□□ -0.74
CLN3-229ENST00000567963 TEX46H3BTG2 121 aa10.4□□□□□ -0.74
CLN3-229ENST00000567963 MGPP08493 103 aa10.4□□□□□ -0.74
CLN3-229ENST00000567963 KRTAP26-1Q6PEX3 210 aa10.4□□□□□ -0.74
CLN3-229ENST00000567963 CLPSL2Q6UWE3 100 aa10.4□□□□□ -0.74
CLN3-229ENST00000567963 SMIM12Q96EX1 92 aa10.4□□□□□ -0.74
CLN3-229ENST00000567963 IGHV1-24A0A0C4DH33 117 aa10.39□□□□□ -0.75
CLN3-229ENST00000567963 RAB19A4D1S5 217 aa10.39□□□□□ -0.75
CLN3-229ENST00000567963 H7C1H1 209 aa10.39□□□□□ -0.75
CLN3-229ENST00000567963 CACNG7P62955 275 aa10.39□□□□□ -0.75
CLN3-229ENST00000567963 GNG4P50150 75 aa10.38□□□□□ -0.75
CLN3-229ENST00000567963 SUMO4Q6EEV6 95 aa10.38□□□□□ -0.75
CLN3-229ENST00000567963 C9orf163Q8N9P6 203 aa10.38□□□□□ -0.75
CLN3-229ENST00000567963 F2Z2F3 143 aa10.37□□□□□ -0.75
CLN3-229ENST00000567963 RAB14P61106 215 aa10.37□□□□□ -0.75
CLN3-229ENST00000567963 MEF2BQ02080 365 aaPredicted RBP10.37□□□□□ -0.75
CLN3-229ENST00000567963 REG3AQ06141 175 aa10.37□□□□□ -0.75
CLN3-229ENST00000567963 XKRY2A2RUG3 117 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 PDE6DO43924 150 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 P01737 135 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 TRBV20OR9-2A0A075B6H5 130 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 A0A1B0GUV1 79 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 NTF3P20783 257 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 RASL11AQ6T310 242 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 LYZL1Q6UWQ5 148 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 C20orf203Q8NBC4 194 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 CLRN3Q8NCR9 226 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 MED9Q9NWA0 146 aa10.36□□□□□ -0.75
CLN3-229ENST00000567963 FAT3Q8TDW7 4589 aa10.35□□□□□ -0.75
CLN3-229ENST00000567963 IGLV10-54A0A075B6I4 117 aa10.35□□□□□ -0.75
CLN3-229ENST00000567963 IFNA1P01562 189 aa10.35□□□□□ -0.75
CLN3-229ENST00000567963 TRGC1P0CF51 173 aa10.35□□□□□ -0.75
CLN3-229ENST00000567963 NIT2Q9NQR4 276 aa10.35□□□□□ -0.75
CLN3-229ENST00000567963 IGLV4-60A0A075B6I1 120 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 TRAV8-4A0A0B4J246 113 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms