RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 C5orf17Q8NAS9 161 aa9.85□□□□□ -0.83
CLK3-217ENST00000566126 AQP10Q96PS8 301 aa9.85□□□□□ -0.83
CLK3-217ENST00000566126 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.84□□□□□ -0.83
CLK3-217ENST00000566126 C17orf112F2Z3M2 114 aa9.84□□□□□ -0.83
CLK3-217ENST00000566126 K7EQM0 130 aa9.84□□□□□ -0.83
CLK3-217ENST00000566126 M0R036 132 aa9.84□□□□□ -0.83
CLK3-217ENST00000566126 TPT1P13693 172 aaKnown RBP9.84□□□□□ -0.83
CLK3-217ENST00000566126 CYCSP99999 105 aaKnown RBP9.84□□□□□ -0.83
CLK3-217ENST00000566126 IL15RAQ13261 267 aa9.84□□□□□ -0.83
CLK3-217ENST00000566126 SULT1A2P50226 295 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 CRIP1P50238 77 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 PQLC2Q6ZP29 291 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 PHF5AQ7RTV0 110 aaKnown RBP9.83□□□□□ -0.84
CLK3-217ENST00000566126 LINC00526Q96FQ7 95 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 CARD19Q96LW7 228 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 CDIP1Q9H305 208 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 V9GYH0 126 aa9.83□□□□□ -0.84
CLK3-217ENST00000566126 TRAV6A0A075B6T7 132 aa9.82□□□□□ -0.84
CLK3-217ENST00000566126 GAGE2BQ13066 116 aa9.81□□□□□ -0.84
CLK3-217ENST00000566126 C9orf116Q5BN46 136 aaPredicted RBP9.8□□□□□ -0.84
CLK3-217ENST00000566126 KRTAP11-1Q8IUC1 163 aa9.8□□□□□ -0.84
CLK3-217ENST00000566126 ARL2-SNX15V9GYD0 113 aa9.8□□□□□ -0.84
CLK3-217ENST00000566126 IGKV3OR2-268A0A0C4DH90 116 aa9.79□□□□□ -0.84
CLK3-217ENST00000566126 HMGB3O15347 200 aaKnown RBP9.79□□□□□ -0.84
CLK3-217ENST00000566126 TMBIM6P55061 237 aa9.79□□□□□ -0.84
CLK3-217ENST00000566126 CHCHD10Q8WYQ3 142 aaPredicted RBP9.79□□□□□ -0.84
CLK3-217ENST00000566126 TMEM243Q9BU79 118 aa9.79□□□□□ -0.84
CLK3-217ENST00000566126 EPDR1Q9UM22 224 aa9.79□□□□□ -0.84
CLK3-217ENST00000566126 TMSB15BA0A087X1C1 80 aa9.78□□□□□ -0.84
CLK3-217ENST00000566126 TRAV34A0A0B4J273 112 aa9.78□□□□□ -0.84
CLK3-217ENST00000566126 BTCP35070 178 aa9.78□□□□□ -0.84
CLK3-217ENST00000566126 TPRXLQ17RH7 258 aa9.78□□□□□ -0.84
CLK3-217ENST00000566126 NAP1L6A6NFF2 107 aa9.77□□□□□ -0.85
CLK3-217ENST00000566126 FOXI1Q12951 378 aa9.77□□□□□ -0.85
CLK3-217ENST00000566126 SDHCQ99643 169 aaPredicted RBP9.77□□□□□ -0.85
CLK3-217ENST00000566126 CARHSP1Q9Y2V2 147 aaKnown RBP9.77□□□□□ -0.85
CLK3-217ENST00000566126 F5H697 171 aa9.76□□□□□ -0.85
CLK3-217ENST00000566126 H3BMQ9 156 aa9.76□□□□□ -0.85
CLK3-217ENST00000566126 SH2D1AO60880 128 aa9.76□□□□□ -0.85
CLK3-217ENST00000566126 ARL14EPLP0DKL9 152 aa9.76□□□□□ -0.85
CLK3-217ENST00000566126 SUMO1P63165 101 aaKnown RBP9.76□□□□□ -0.85
CLK3-217ENST00000566126 EIF5AP63241 154 aaKnown RBP9.76□□□□□ -0.85
CLK3-217ENST00000566126 RETNLBQ9BQ08 111 aa9.76□□□□□ -0.85
CLK3-217ENST00000566126 SSBP4Q9BWG4 385 aaPredicted RBP9.76□□□□□ -0.85
CLK3-217ENST00000566126 LOC107984640A0A0U1RRK4 108 aa9.75□□□□□ -0.85
CLK3-217ENST00000566126 SYCNQ0VAF6 134 aa9.75□□□□□ -0.85
CLK3-217ENST00000566126 OR10AG1Q8NH19 301 aa9.75□□□□□ -0.85
CLK3-217ENST00000566126 A0A1W2PPV4 95 aa9.74□□□□□ -0.85
CLK3-217ENST00000566126 ZNF674Q2M3X9 581 aa9.74□□□□□ -0.85
CLK3-217ENST00000566126 LINC01559Q495D7 138 aa9.74□□□□□ -0.85
CLK3-217ENST00000566126 KRTAP4-1Q9BYQ7 146 aa9.74□□□□□ -0.85
CLK3-217ENST00000566126 RBM38Q9H0Z9 239 aaKnown RBP9.74□□□□□ -0.85
CLK3-217ENST00000566126 A0A087WZ39 114 aa9.73□□□□□ -0.85
CLK3-217ENST00000566126 BCL2P10415 239 aa9.73□□□□□ -0.85
CLK3-217ENST00000566126 RPL12P30050 165 aaKnown RBP9.73□□□□□ -0.85
CLK3-217ENST00000566126 Q86TA4 180 aa9.73□□□□□ -0.85
CLK3-217ENST00000566126 MLST8Q9BVC4 326 aa9.73□□□□□ -0.85
CLK3-217ENST00000566126 RPP21Q9H633 154 aaKnown RBP9.73□□□□□ -0.85
CLK3-217ENST00000566126 CRYGAP11844 174 aa9.72□□□□□ -0.85
CLK3-217ENST00000566126 SEC22CQ9BRL7 303 aa9.72□□□□□ -0.85
CLK3-217ENST00000566126 IGHV1-58A0A0C4DH39 117 aa9.71□□□□□ -0.86
CLK3-217ENST00000566126 FAM162BQ5T6X4 162 aa9.71□□□□□ -0.86
CLK3-217ENST00000566126 COX8CQ7Z4L0 72 aa9.71□□□□□ -0.86
CLK3-217ENST00000566126 ZNF471Q9BX82 626 aaPredicted RBP9.71□□□□□ -0.86
CLK3-217ENST00000566126 UBE2L6O14933 153 aa9.7□□□□□ -0.86
CLK3-217ENST00000566126 STAG3L2P0CL84 134 aa9.7□□□□□ -0.86
CLK3-217ENST00000566126 STAG3L3P0CL85 134 aa9.7□□□□□ -0.86
CLK3-217ENST00000566126 FGF6P10767 208 aa9.7□□□□□ -0.86
CLK3-217ENST00000566126 MUC21A0A140T8X8 626 aa9.69□□□□□ -0.86
CLK3-217ENST00000566126 M0QY20 66 aa9.69□□□□□ -0.86
CLK3-217ENST00000566126 GCHFRP30047 84 aa9.69□□□□□ -0.86
CLK3-217ENST00000566126 H0YIZ8 118 aa9.68□□□□□ -0.86
CLK3-217ENST00000566126 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.68□□□□□ -0.86
CLK3-217ENST00000566126 DEFA3P59666 94 aa9.68□□□□□ -0.86
CLK3-217ENST00000566126 MEF2BQ02080 365 aaPredicted RBP9.68□□□□□ -0.86
CLK3-217ENST00000566126 ZNF561-AS1K7EIQ3 104 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 XCL1P47992 114 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 CAMPP49913 170 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 LCE2CQ5TA81 110 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 SCGB1C1Q8TD33 95 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 PGLYRP4Q96LB8 373 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 MED28Q9H204 178 aa9.67□□□□□ -0.86
CLK3-217ENST00000566126 IGLV7-46A0A075B6I9 117 aa9.66□□□□□ -0.86
CLK3-217ENST00000566126 A0A087X002 238 aa9.66□□□□□ -0.86
CLK3-217ENST00000566126 CDC34P49427 236 aaPredicted RBP9.66□□□□□ -0.86
CLK3-217ENST00000566126 NKX2-5P52952 324 aaPredicted RBP9.66□□□□□ -0.86
CLK3-217ENST00000566126 CNPY1Q3B7I2 92 aa9.66□□□□□ -0.86
CLK3-217ENST00000566126 NUP35Q8NFH5 326 aa9.66□□□□□ -0.86
CLK3-217ENST00000566126 SNAI2O43623 268 aa9.65□□□□□ -0.86
CLK3-217ENST00000566126 APOMO95445 188 aa9.65□□□□□ -0.86
CLK3-217ENST00000566126 RPL18AQ02543 176 aaKnown RBP9.65□□□□□ -0.86
CLK3-217ENST00000566126 TRIQKQ629K1 86 aa9.65□□□□□ -0.86
CLK3-217ENST00000566126 IGLV4-69A0A075B6H9 119 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 A6NHS1 94 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 PEX7O00628 323 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 SSTP61278 116 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 SPANXN1Q5VSR9 72 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 RAB24Q969Q5 203 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 SMIM3Q9BZL3 60 aa9.64□□□□□ -0.87
CLK3-217ENST00000566126 ZFP30Q9Y2G7 519 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms