RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 HIST1H2BKO60814 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BJP06899 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BOP23527 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BBP33778 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BDP58876 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BCP62807 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST2H2BEQ16778 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.05□□□□□ -0.96
CLK3-214ENST00000564096 SLC25A29Q8N8R3 303 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BHQ93079 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 RPL39LQ96EH5 51 aaKnown RBP9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BNQ99877 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 HIST1H2BMQ99879 126 aa9.05□□□□□ -0.96
CLK3-214ENST00000564096 NXT2Q9NPJ8 142 aaKnown RBP9.05□□□□□ -0.96
CLK3-214ENST00000564096 PAX4O43316 350 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 S100A6P06703 90 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 HOXA5P20719 270 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 CRYBA4P53673 196 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 RPL32P62910 135 aaKnown RBP9.04□□□□□ -0.96
CLK3-214ENST00000564096 BAGE3Q86Y29 109 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 C18orf32Q8TCD1 76 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 SMIM2Q9BVW6 85 aa9.04□□□□□ -0.96
CLK3-214ENST00000564096 TRBV7-3A0A075B6L6 115 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 DEFB131BA0A096LNP1 70 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 SDHAF1A6NFY7 115 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 TCAPO15273 167 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 Q0VG73 95 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 Q6ZSN1 163 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 FA2HQ7L5A8 372 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 NEXN-AS1Q8NBZ9 246 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 PRSS3P2Q8NHM4 247 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 KIR2DL4Q99706 377 aa9.03□□□□□ -0.96
CLK3-214ENST00000564096 TMA7Q9Y2S6 64 aaKnown RBP9.03□□□□□ -0.96
CLK3-214ENST00000564096 MEGF8Q7Z7M0 2845 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 TRAV26-1A0A087WT03 109 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GAGE12JA6NER3 117 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GAS8-AS1O95177 125 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 P0DMU3 169 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 FAM231AP0DMU4 169 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 FAM231CP0DMU5 169 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GYPEP15421 78 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GAGE1Q13065 139 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GAGE4Q13068 117 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GAGE5Q13069 117 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 GAGE13Q4V321 117 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 C4orf48Q5BLP8 95 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 SH2D6Q7Z4S9 175 aa9.02□□□□□ -0.97
CLK3-214ENST00000564096 LOC389332A0A1B0GUA5 103 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 PRSS47A8MTI9 375 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 H3BNG1 76 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 K7EMI3 77 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 VCYO14598 125 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 IQCJQ1A5X6 159 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 RNASEKQ6P5S7 137 aaKnown RBP9.01□□□□□ -0.97
CLK3-214ENST00000564096 NBEAL2Q6ZNJ1 2754 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 DAZ4Q86SG3 579 aaKnown RBP9.01□□□□□ -0.97
CLK3-214ENST00000564096 Q8N8P6 123 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 ZNRF2Q8NHG8 242 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 CHCHD1Q96BP2 118 aaKnown RBP9.01□□□□□ -0.97
CLK3-214ENST00000564096 TMEM70Q9BUB7 260 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 DAZ3Q9NR90 486 aaKnown RBP9.01□□□□□ -0.97
CLK3-214ENST00000564096 ICOSQ9Y6W8 199 aa9.01□□□□□ -0.97
CLK3-214ENST00000564096 A0A0J9YY99 117 aa9□□□□□ -0.97
CLK3-214ENST00000564096 TRBV27A0A0K0K1C4 114 aa9□□□□□ -0.97
CLK3-214ENST00000564096 I3L3M4 83 aa9□□□□□ -0.97
CLK3-214ENST00000564096 FCER1GP30273 86 aa9□□□□□ -0.97
CLK3-214ENST00000564096 AP5S1Q9NUS5 200 aa9□□□□□ -0.97
CLK3-214ENST00000564096 HUWE1Q7Z6Z7 4374 aaKnown RBP8.99□□□□□ -0.97
CLK3-214ENST00000564096 HSBP1O75506 76 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 LINC00694P0DN24 101 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 IFI27P40305 119 aaPredicted RBP8.99□□□□□ -0.97
CLK3-214ENST00000564096 NDUFA6P56556 154 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 UBE2D3P61077 147 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 UBE2D2P62837 147 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 COTL1Q14019 142 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 MRPL23Q16540 153 aaKnown RBP8.99□□□□□ -0.97
CLK3-214ENST00000564096 ORMDL2Q53FV1 153 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 TMEM97Q5BJF2 176 aa8.99□□□□□ -0.97
CLK3-214ENST00000564096 SERF1AO75920 110 aa8.98□□□□□ -0.97
CLK3-214ENST00000564096 LINC00614P0C842 121 aa8.98□□□□□ -0.97
CLK3-214ENST00000564096 POLR2KP53803 58 aaKnown RBP8.98□□□□□ -0.97
CLK3-214ENST00000564096 COA6Q5JTJ3 125 aaKnown RBP8.98□□□□□ -0.97
CLK3-214ENST00000564096 C15orf53Q8NAA6 179 aa8.98□□□□□ -0.97
CLK3-214ENST00000564096 PHLDA1Q8WV24 401 aaPredicted RBP8.98□□□□□ -0.97
CLK3-214ENST00000564096 VSIG2Q96IQ7 327 aa8.98□□□□□ -0.97
CLK3-214ENST00000564096 DNAH9Q9NYC9 4486 aa8.98□□□□□ -0.97
CLK3-214ENST00000564096 NACAE9PAV3 2078 aa8.98□□□□□ -0.97
CLK3-214ENST00000564096 LOC100131303A0A0U1RQF7 123 aa8.97□□□□□ -0.97
CLK3-214ENST00000564096 NUPR2A6NF83 97 aa8.97□□□□□ -0.97
CLK3-214ENST00000564096 G0S2P27469 103 aa8.97□□□□□ -0.97
CLK3-214ENST00000564096 NEGR1Q7Z3B1 354 aa8.97□□□□□ -0.97
CLK3-214ENST00000564096 ATP6V0E2Q8NHE4 81 aa8.97□□□□□ -0.97
CLK3-214ENST00000564096 IGLV2-18A0A075B6J9 118 aa8.96□□□□□ -0.98
CLK3-214ENST00000564096 LAGE3Q14657 143 aa8.96□□□□□ -0.98
CLK3-214ENST00000564096 NIT1Q86X76 327 aa8.96□□□□□ -0.98
CLK3-214ENST00000564096 TENM3Q9P273 2699 aa8.95□□□□□ -0.98
CLK3-214ENST00000564096 IGHV3-38A0A0C4DH36 116 aa8.95□□□□□ -0.98
CLK3-214ENST00000564096 LINC01546A6NGU7 62 aa8.95□□□□□ -0.98
CLK3-214ENST00000564096 LINC01549A6NIU2 74 aa8.95□□□□□ -0.98
CLK3-214ENST00000564096 NUDT3O95989 172 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms