RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 DAZAP1Q96EP5 407 aaKnown RBP10.87□□□□□ -0.67
CLN3-211ENST00000564091 A0A1B0GV50 99 aa10.86□□□□□ -0.67
CLN3-211ENST00000564091 ARPC5O15511 151 aa10.86□□□□□ -0.67
CLN3-211ENST00000564091 GAGE6Q13070 117 aa10.86□□□□□ -0.67
CLN3-211ENST00000564091 SPANXN1Q5VSR9 72 aa10.86□□□□□ -0.67
CLN3-211ENST00000564091 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.86□□□□□ -0.67
CLN3-211ENST00000564091 SSBP4Q9BWG4 385 aaPredicted RBP10.86□□□□□ -0.67
CLN3-211ENST00000564091 PLA2G2DQ9UNK4 145 aa10.86□□□□□ -0.67
CLN3-211ENST00000564091 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.86□□□□□ -0.67
CLN3-211ENST00000564091 SCO2A0A1W2PP80 73 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 PANO1I0J062 215 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 SNAI2O43623 268 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 CXCL1P09341 107 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 RBX1P62877 108 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 BAGE2Q86Y30 109 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 LINC00269Q8N2A0 174 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 DERL1Q9BUN8 251 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 MLST8Q9BVC4 326 aa10.85□□□□□ -0.67
CLN3-211ENST00000564091 PKIAP61925 76 aa10.84□□□□□ -0.67
CLN3-211ENST00000564091 DGAT2L7PQ6IED9 249 aa10.84□□□□□ -0.67
CLN3-211ENST00000564091 KRTAP26-1Q6PEX3 210 aa10.84□□□□□ -0.67
CLN3-211ENST00000564091 C9orf163Q8N9P6 203 aa10.84□□□□□ -0.67
CLN3-211ENST00000564091 SFT2D1Q8WV19 159 aa10.84□□□□□ -0.67
CLN3-211ENST00000564091 PRR34Q9NV39 138 aa10.84□□□□□ -0.67
CLN3-211ENST00000564091 S100A9P06702 114 aaKnown RBP10.83□□□□□ -0.68
CLN3-211ENST00000564091 VAX2Q9UIW0 290 aa10.83□□□□□ -0.68
CLN3-211ENST00000564091 KIF25-AS1Q9Y6Z4 181 aa10.83□□□□□ -0.68
CLN3-211ENST00000564091 SMLR1H3BR10 107 aa10.82□□□□□ -0.68
CLN3-211ENST00000564091 OR5AL1P0C617 328 aa10.82□□□□□ -0.68
CLN3-211ENST00000564091 TMEM97Q5BJF2 176 aa10.82□□□□□ -0.68
CLN3-211ENST00000564091 SDIM1Q6ZPB5 146 aa10.82□□□□□ -0.68
CLN3-211ENST00000564091 FAM213BQ8TBF2 198 aa10.82□□□□□ -0.68
CLN3-211ENST00000564091 SMIM17P0DL12 118 aa10.81□□□□□ -0.68
CLN3-211ENST00000564091 MBD3L1Q8WWY6 194 aa10.81□□□□□ -0.68
CLN3-211ENST00000564091 IGLV10-54A0A075B6I4 117 aa10.8□□□□□ -0.68
CLN3-211ENST00000564091 TRBV25-1A0A075B6N4 114 aa10.8□□□□□ -0.68
CLN3-211ENST00000564091 PFDN1O60925 122 aa10.8□□□□□ -0.68
CLN3-211ENST00000564091 IQCJQ1A5X6 159 aa10.79□□□□□ -0.68
CLN3-211ENST00000564091 TMUB2Q71RG4 321 aa10.79□□□□□ -0.68
CLN3-211ENST00000564091 AP1S3Q96PC3 154 aa10.79□□□□□ -0.68
CLN3-211ENST00000564091 IGHV1-24A0A0C4DH33 117 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 M0QY20 66 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 MGPP08493 103 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 GZMBP10144 247 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 REG3AQ06141 175 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 CLRN3Q8NCR9 226 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 TPPP3Q9BW30 176 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 BATF3Q9NR55 127 aa10.78□□□□□ -0.68
CLN3-211ENST00000564091 RPL35P42766 123 aaKnown RBP10.77□□□□□ -0.69
CLN3-211ENST00000564091 SUMO4Q6EEV6 95 aa10.77□□□□□ -0.69
CLN3-211ENST00000564091 KCNRGQ8N5I3 272 aa10.77□□□□□ -0.69
CLN3-211ENST00000564091 C20orf203Q8NBC4 194 aa10.77□□□□□ -0.69
CLN3-211ENST00000564091 TNXBP22105 4242 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 hDV102S1A0JD36 115 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 UMAD1C9J7I0 102 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 MT1HL1P0DM35 61 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 RAB5CP51148 216 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 GFRA4Q9GZZ7 299 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 LRP2P98164 4655 aa10.76□□□□□ -0.69
CLN3-211ENST00000564091 IGLV4-60A0A075B6I1 120 aa10.75□□□□□ -0.69
CLN3-211ENST00000564091 SLPIP03973 132 aa10.75□□□□□ -0.69
CLN3-211ENST00000564091 NKX2-5P52952 324 aaPredicted RBP10.75□□□□□ -0.69
CLN3-211ENST00000564091 CNBPP62633 177 aaKnown RBP10.75□□□□□ -0.69
CLN3-211ENST00000564091 DPH3Q96FX2 82 aa10.75□□□□□ -0.69
CLN3-211ENST00000564091 A0A0D9SG52 128 aa10.74□□□□□ -0.69
CLN3-211ENST00000564091 H2AFB1P0C5Y9 115 aa10.74□□□□□ -0.69
CLN3-211ENST00000564091 IGLC6P0CF74 106 aa10.74□□□□□ -0.69
CLN3-211ENST00000564091 CHTF8P0CG12 524 aa10.74□□□□□ -0.69
CLN3-211ENST00000564091 FER1L6-AS1Q8NA97 138 aa10.74□□□□□ -0.69
CLN3-211ENST00000564091 CCL20P78556 96 aa10.73□□□□□ -0.69
CLN3-211ENST00000564091 CIRBPQ14011 172 aaKnown RBP10.73□□□□□ -0.69
CLN3-211ENST00000564091 OR2D3Q8NGH3 330 aa10.73□□□□□ -0.69
CLN3-211ENST00000564091 TMEM243Q9BU79 118 aa10.73□□□□□ -0.69
CLN3-211ENST00000564091 IGHV3-64A0A075B6Q5 118 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 A0A087WYN8 130 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 TRAV8-4A0A0B4J246 113 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 H7C1H1 209 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 P01737 135 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 ZNF345Q14585 488 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 CENPWQ5EE01 88 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 Q6ZRU5 148 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 AP5S1Q9NUS5 200 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 GNG13Q9P2W3 67 aa10.72□□□□□ -0.69
CLN3-211ENST00000564091 A0A1B0GUV1 79 aa10.71□□□□□ -0.69
CLN3-211ENST00000564091 RGS21Q2M5E4 152 aa10.71□□□□□ -0.69
CLN3-211ENST00000564091 RASL11AQ6T310 242 aa10.71□□□□□ -0.69
CLN3-211ENST00000564091 C11orf52Q96A22 123 aa10.71□□□□□ -0.69
CLN3-211ENST00000564091 KANTRA0A1W2PQU2 76 aa10.7□□□□□ -0.7
CLN3-211ENST00000564091 RAB19A4D1S5 217 aa10.7□□□□□ -0.7
CLN3-211ENST00000564091 BCL2L11O43521 198 aa10.7□□□□□ -0.7
CLN3-211ENST00000564091 RPS20P60866 119 aaKnown RBP10.7□□□□□ -0.7
CLN3-211ENST00000564091 CACNG7P62955 275 aa10.7□□□□□ -0.7
CLN3-211ENST00000564091 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.69□□□□□ -0.7
CLN3-211ENST00000564091 C19orf71A6NCJ1 209 aa10.69□□□□□ -0.7
CLN3-211ENST00000564091 SPACA4Q8TDM5 124 aa10.69□□□□□ -0.7
CLN3-211ENST00000564091 RNF213Q63HN8 5207 aa10.69□□□□□ -0.7
CLN3-211ENST00000564091 HMSDA8MTL9 139 aa10.68□□□□□ -0.7
CLN3-211ENST00000564091 UBE2L6O14933 153 aa10.68□□□□□ -0.7
CLN3-211ENST00000564091 SULT1A2P50226 295 aa10.68□□□□□ -0.7
CLN3-211ENST00000564091 LYZL1Q6UWQ5 148 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 184.6 ms