RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SPATA12Q7Z6I5 190 aa15.24■□□□□ 0.03
CLN3-209ENST00000561689 TCAPO15273 167 aa15.24■□□□□ 0.03
CLN3-209ENST00000561689 OVOL2Q9BRP0 275 aa15.24■□□□□ 0.03
CLN3-209ENST00000561689 A0A096LNJ9 63 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 GAGE12BA1L429 117 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 GAGE7O76087 117 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 GAGE12FP0CL80 117 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 GAGE12GP0CL81 117 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 GAGE12IP0CL82 117 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 OR4C5Q8NGB2 326 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 ST20Q9HBF5 79 aa15.23■□□□□ 0.03
CLN3-209ENST00000561689 LINC01546A6NGU7 62 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 IGHV3-53P01767 116 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 NEGR1Q7Z3B1 354 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 ATOH7Q8N100 152 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 OR11H2Q8NH07 326 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 SMIM9A6NGZ8 99 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 RHODO00212 210 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 P0DMU3 169 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 FAM231AP0DMU4 169 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 FAM231CP0DMU5 169 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 ZNF479Q96JC4 524 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 NOTCH1P46531 2555 aa15.22■□□□□ 0.03
CLN3-209ENST00000561689 LEPROTL1O95214 131 aa15.21■□□□□ 0.03
CLN3-209ENST00000561689 TRGV2A0A075B6R0 118 aa15.2■□□□□ 0.02
CLN3-209ENST00000561689 BTF3P20290 206 aaKnown RBP15.2■□□□□ 0.02
CLN3-209ENST00000561689 DEFB104AQ8WTQ1 72 aa15.2■□□□□ 0.02
CLN3-209ENST00000561689 TMEM70Q9BUB7 260 aa15.2■□□□□ 0.02
CLN3-209ENST00000561689 Q9UF83 564 aa15.2■□□□□ 0.02
CLN3-209ENST00000561689 DNAH3Q8TD57 4116 aa15.19■□□□□ 0.02
CLN3-209ENST00000561689 H7C1H1 209 aa15.19■□□□□ 0.02
CLN3-209ENST00000561689 MAJINQ3KP22 176 aa15.19■□□□□ 0.02
CLN3-209ENST00000561689 ZFP2Q6ZN57 461 aa15.19■□□□□ 0.02
CLN3-209ENST00000561689 TRAV4A0A0B4J268 109 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 TRBV6-5A0A0K0K1A5 114 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 SDHAF1A6NFY7 115 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 DEFB4AO15263 64 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 HBDP02042 147 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 POLR2KP53803 58 aaKnown RBP15.18■□□□□ 0.02
CLN3-209ENST00000561689 LAGE3Q14657 143 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 A8MZ25 164 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 LURAP1LQ8IV03 231 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 RNF183Q96D59 192 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 NACAE9PAV3 2078 aa15.18■□□□□ 0.02
CLN3-209ENST00000561689 PRB2P02812 416 aaPredicted RBP15.17■□□□□ 0.02
CLN3-209ENST00000561689 SPATA45Q537H7 98 aa15.17■□□□□ 0.02
CLN3-209ENST00000561689 EDA2RQ9HAV5 297 aa15.17■□□□□ 0.02
CLN3-209ENST00000561689 NBEAL1Q6ZS30 2694 aa15.17■□□□□ 0.02
CLN3-209ENST00000561689 EREGO14944 169 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 DEFB130BP0DP73 79 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 DEFB130AP0DP74 79 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 FCER1GP30273 86 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 IGHV4-28A0A0C4DH34 117 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 VCYO14598 125 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 MIEN1Q9BRT3 115 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 HSPB8Q9UJY1 196 aa15.16■□□□□ 0.02
CLN3-209ENST00000561689 MGAM2Q2M2H8 2515 aa15.15■□□□□ 0.02
CLN3-209ENST00000561689 RPL32P62910 135 aaKnown RBP15.15■□□□□ 0.02
CLN3-209ENST00000561689 NUDT3O95989 172 aa15.15■□□□□ 0.02
CLN3-209ENST00000561689 TRBV27A0A0K0K1C4 114 aa15.14■□□□□ 0.01
CLN3-209ENST00000561689 SYS1-DBNDD2H3BUS1 97 aa15.14■□□□□ 0.01
CLN3-209ENST00000561689 Q8NAQ8 132 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 SNHG12Q9BXW3 62 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 TNFRSF18Q9Y5U5 241 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 ORMDL2Q53FV1 153 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 FAM222AQ5U5X8 452 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 NEXN-AS1Q8NBZ9 246 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 C18orf15Q96N68 181 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 KIR2DL4Q99706 377 aa15.13■□□□□ 0.01
CLN3-209ENST00000561689 MIFP14174 115 aa15.12■□□□□ 0.01
CLN3-209ENST00000561689 RETNQ9HD89 108 aa15.12■□□□□ 0.01
CLN3-209ENST00000561689 H0Y8G0 127 aa15.11■□□□□ 0.01
CLN3-209ENST00000561689 RIPPLY3P57055 190 aa15.11■□□□□ 0.01
CLN3-209ENST00000561689 MAP1LC3CQ9BXW4 147 aa15.11■□□□□ 0.01
CLN3-209ENST00000561689 K7EMI3 77 aa15.11■□□□□ 0.01
CLN3-209ENST00000561689 LINC00612Q8N6U2 182 aa15.11■□□□□ 0.01
CLN3-209ENST00000561689 SLC25A29Q8N8R3 303 aa15.11■□□□□ 0.01
CLN3-209ENST00000561689 TRAV9-2A0A087WT02 112 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 A0A1B0GV90 55 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 I3L3M4 83 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 IGLC3P0DOY3 106 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 C2orf88Q9BSF0 95 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 TRGV4A0A0C4DH28 118 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 K7EQD1 137 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 DKK2Q9UBU2 259 aa15.09■□□□□ 0.01
CLN3-209ENST00000561689 LYRM9A8MSI8 78 aa15.08■□□□□ 0
CLN3-209ENST00000561689 IFI27L1Q96BM0 104 aa15.08■□□□□ 0
CLN3-209ENST00000561689 TSHBP01222 138 aa15.07■□□□□ 0
CLN3-209ENST00000561689 DNAJC30Q96LL9 226 aa15.07■□□□□ 0
CLN3-209ENST00000561689 FHL2Q14192 279 aa15.07■□□□□ 0
CLN3-209ENST00000561689 ZNRF2Q8NHG8 242 aa15.07■□□□□ 0
CLN3-209ENST00000561689 PMCHL2Q9BQD1 86 aa15.07■□□□□ 0
CLN3-209ENST00000561689 CELA1Q9UNI1 258 aa15.07■□□□□ 0
CLN3-209ENST00000561689 M0R143 59 aa15.06■□□□□ 0
CLN3-209ENST00000561689 C2orf66Q6UXQ4 117 aa15.06■□□□□ 0
CLN3-209ENST00000561689 PHLDA1Q8WV24 401 aaPredicted RBP15.06■□□□□ 0
CLN3-209ENST00000561689 IGHV3-38A0A0C4DH36 116 aa15.05■□□□□ 0
CLN3-209ENST00000561689 K7EIL1 84 aa15.05■□□□□ 0
CLN3-209ENST00000561689 CIDEAO60543 219 aa15.05■□□□□ 0
CLN3-209ENST00000561689 KPRPQ5T749 579 aaPredicted RBP15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms