RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TEX29Q8N6K0 151 aa13.58□□□□□ -0.24
PRPF40B-208ENST00000548436 C11orf44Q8N8P7 122 aa13.58□□□□□ -0.24
PRPF40B-208ENST00000548436 NAA38Q9BRA0 125 aaKnown RBP13.58□□□□□ -0.24
PRPF40B-208ENST00000548436 HECTD1Q9ULT8 2610 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 LINC01549A6NIU2 74 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 RAX2Q96IS3 184 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 WNK1Q9H4A3 2382 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 IGLV4-69A0A075B6H9 119 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 OR11H12B2RN74 326 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 H3BUT2 72 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 OR11H2Q8NH07 326 aa13.57□□□□□ -0.24
PRPF40B-208ENST00000548436 KRTAP1-1Q07627 177 aa13.56□□□□□ -0.24
PRPF40B-208ENST00000548436 CEND1Q8N111 149 aa13.56□□□□□ -0.24
PRPF40B-208ENST00000548436 TMEM141Q96I45 108 aa13.56□□□□□ -0.24
PRPF40B-208ENST00000548436 TIMM17AQ99595 171 aa13.56□□□□□ -0.24
PRPF40B-208ENST00000548436 E9PLD3 99 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 EMP1P54849 157 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 PMVKQ15126 192 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 TM2D2Q9BX73 214 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 CST9LQ9H4G1 147 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 A0A1W2PRX2 142 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 C11orf86A6NJI1 115 aa13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 SPAG8Q99932 426 aaPredicted RBP13.55□□□□□ -0.24
PRPF40B-208ENST00000548436 IGHV3-73A0A0B4J1V6 119 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 MYMXA0A1B0GTQ4 84 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 P0DMU3 169 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 FAM231AP0DMU4 169 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 FAM231CP0DMU5 169 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 PROK1P58294 105 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 PRADC1Q9BSG0 188 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 SMIM13P0DJ93 91 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 CD28P10747 220 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 NSUN5P1Q3KNT7 163 aa13.54□□□□□ -0.24
PRPF40B-208ENST00000548436 RHOHQ15669 191 aa13.53□□□□□ -0.24
PRPF40B-208ENST00000548436 I3L3M4 83 aa13.52□□□□□ -0.24
PRPF40B-208ENST00000548436 FHL3Q13643 280 aa13.52□□□□□ -0.24
PRPF40B-208ENST00000548436 GAGE10A6NGK3 116 aa13.52□□□□□ -0.25
PRPF40B-208ENST00000548436 K7ERJ3 54 aa13.52□□□□□ -0.25
PRPF40B-208ENST00000548436 M0R2P5 195 aa13.52□□□□□ -0.25
PRPF40B-208ENST00000548436 UFSP1Q6NVU6 142 aa13.52□□□□□ -0.25
PRPF40B-208ENST00000548436 OPRPNQ99935 248 aaPredicted RBP13.52□□□□□ -0.25
PRPF40B-208ENST00000548436 UNC79Q9P2D8 2635 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 TAL2Q16559 108 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 ODF3L2Q3SX64 289 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 RNASE8Q8TDE3 154 aaKnown RBP13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 PHLDA1Q8WV24 401 aaPredicted RBP13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 EDA2RQ9HAV5 297 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 ACANP16112 2415 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 CCL24O00175 119 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 ZNF415Q09FC8 603 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 LINC01587Q99440 93 aa13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 NHP2Q9NX24 153 aaKnown RBP13.51□□□□□ -0.25
PRPF40B-208ENST00000548436 TRBV7-3A0A075B6L6 115 aa13.5□□□□□ -0.25
PRPF40B-208ENST00000548436 C20orf203Q8NBC4 194 aa13.5□□□□□ -0.25
PRPF40B-208ENST00000548436 C11orf72Q8NBR9 251 aa13.5□□□□□ -0.25
PRPF40B-208ENST00000548436 ZNRF2Q8NHG8 242 aa13.5□□□□□ -0.25
PRPF40B-208ENST00000548436 HIST1H4GQ99525 98 aa13.5□□□□□ -0.25
PRPF40B-208ENST00000548436 YAE1D1Q9NRH1 226 aa13.5□□□□□ -0.25
PRPF40B-208ENST00000548436 A0A1W2PPM0 123 aa13.49□□□□□ -0.25
PRPF40B-208ENST00000548436 PAPPA-AS1Q5QFB9 102 aa13.49□□□□□ -0.25
PRPF40B-208ENST00000548436 CITED2Q99967 270 aaPredicted RBP13.49□□□□□ -0.25
PRPF40B-208ENST00000548436 ANK3Q12955 4377 aaKnown RBP13.49□□□□□ -0.25
PRPF40B-208ENST00000548436 A8MWV9 139 aa13.49□□□□□ -0.25
PRPF40B-208ENST00000548436 Q9UF83 564 aa13.49□□□□□ -0.25
PRPF40B-208ENST00000548436 BAHCC1Q9P281 2608 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 ITPR2Q14571 2701 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 ZNF815PA8K554 130 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 INSP01308 110 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 Q6ZSN1 163 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 LINC00467Q9BRT7 94 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 TRAV25A0A0B4J276 109 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 GAGE12BA1L429 117 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 K7EP34 96 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 PIK3CD-AS1Q5SR53 167 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 CFAP126Q5VTH2 177 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 LINC01006Q8NI28 216 aa13.48□□□□□ -0.25
PRPF40B-208ENST00000548436 SAMD5Q5TGI4 173 aa13.47□□□□□ -0.25
PRPF40B-208ENST00000548436 GTF2H5Q6ZYL4 71 aa13.47□□□□□ -0.25
PRPF40B-208ENST00000548436 PTH2Q96A98 100 aa13.47□□□□□ -0.25
PRPF40B-208ENST00000548436 PLEKHB2Q96CS7 222 aa13.47□□□□□ -0.25
PRPF40B-208ENST00000548436 XCL2Q9UBD3 114 aa13.47□□□□□ -0.25
PRPF40B-208ENST00000548436 CLUHP3Q96NS8 147 aa13.46□□□□□ -0.25
PRPF40B-208ENST00000548436 FOSL1P15407 271 aa13.46□□□□□ -0.26
PRPF40B-208ENST00000548436 TMEM170BQ5T4T1 132 aa13.46□□□□□ -0.26
PRPF40B-208ENST00000548436 MRPL16Q9NX20 251 aaKnown RBP13.46□□□□□ -0.26
PRPF40B-208ENST00000548436 HERVK_113P61574 105 aa13.45□□□□□ -0.26
PRPF40B-208ENST00000548436 RNASE1P07998 156 aaKnown RBP13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 AZU1P20160 251 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 C12orf74Q32Q52 190 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 STHQ8IWL8 128 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 TSSC4Q9Y5U2 329 aaPredicted RBP13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 IGLV4-3A0A075B6K6 122 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 TSPEAR-AS2P59090 65 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 SCGB2A2Q13296 93 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 NFE4Q86UQ8 179 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 C16orf95Q9H693 158 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 TNFRSF18Q9Y5U5 241 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 SPCS1Q9Y6A9 102 aa13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 SETD2Q9BYW2 2564 aaPredicted RBP13.44□□□□□ -0.26
PRPF40B-208ENST00000548436 FABP2P12104 132 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms