RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 Q8N3U1 123 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 FAM57AQ8TBR7 257 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 C11orf68Q9H3H3 251 aaKnown RBP4.22□□□□□ -1.73
LIMA1-203ENST00000547825 VCYO14598 125 aa4.21□□□□□ -1.73
LIMA1-203ENST00000547825 DUSP14O95147 198 aaKnown RBP4.21□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF80P51504 273 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-203ENST00000547825 SNRPD3P62318 126 aaKnown RBP4.21□□□□□ -1.73
LIMA1-203ENST00000547825 PDE6HQ13956 83 aa4.21□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE2AQ6NT46 116 aa4.21□□□□□ -1.73
LIMA1-203ENST00000547825 TRPT1Q86TN4 253 aaKnown RBP4.21□□□□□ -1.73
LIMA1-203ENST00000547825 DYNLRB2Q8TF09 96 aa4.21□□□□□ -1.73
LIMA1-203ENST00000547825 DUX3Q96PT4 197 aa4.21□□□□□ -1.73
LIMA1-203ENST00000547825 TRAV13-1A0A0B4J241 112 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 E7EQL1 145 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 RPL39P62891 51 aaKnown RBP4.21□□□□□ -1.74
LIMA1-203ENST00000547825 PRSS22Q9GZN4 317 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 J3QQQ9 107 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 K7EIM0 57 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 GNLYP22749 145 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 SYNJ2BPP57105 145 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 MRPL23Q16540 153 aaKnown RBP4.21□□□□□ -1.74
LIMA1-203ENST00000547825 NUP37Q8NFH4 326 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 SPANXB1Q9NS25 103 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-203ENST00000547825 KLK9Q9UKQ9 250 aa4.21□□□□□ -1.74
LIMA1-203ENST00000547825 PRRC2AP48634 2157 aaKnown RBP4.2□□□□□ -1.74
LIMA1-203ENST00000547825 IGHV3-16A0A0C4DH30 117 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 IGHV3-38A0A0C4DH36 116 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 RBAKDNA6NC62 111 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 H3BMM0 161 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 UBE2L6O14933 153 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 ATP6V0E1O15342 81 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 IGLV1-44P01699 117 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 IGHV3-53P01767 116 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 HERV-K104P63124 156 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 PMVKQ15126 192 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 ANKRD29Q8N6D5 301 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 UBE2WQ96B02 151 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 TMEM14CQ9P0S9 112 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 SETXQ7Z333 2677 aaKnown RBP4.2□□□□□ -1.74
LIMA1-203ENST00000547825 CRIP1P50238 77 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 DAND5Q8N907 189 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 LINC01587Q99440 93 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 TIMM21Q9BVV7 248 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-203ENST00000547825 TEN1Q86WV5 123 aa4.2□□□□□ -1.74
LIMA1-203ENST00000547825 OPRPNQ99935 248 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-203ENST00000547825 SPINK13Q1W4C9 94 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 GATD1Q8NB37 220 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 RHPN1-AS1Q9BWJ2 59 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 I3L2K1 104 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 CFC1BP0CG36 223 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 CFC1P0CG37 223 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 Q6ZUT4 128 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 CARD19Q96LW7 228 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 LRRK2Q5S007 2527 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 TRAV41A0A0B4J266 112 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 LHBP01229 141 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 LINC00158P58513 81 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 ZNF493Q6ZR52 646 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 JPT2Q9H910 190 aa4.19□□□□□ -1.74
LIMA1-203ENST00000547825 DNAH3Q8TD57 4116 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 A0A0J9YXV3 536 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 PRIMA1Q86XR5 153 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 PLEKHB2Q96CS7 222 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 TMEM101Q96IK0 257 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 NDUFA12Q9UI09 145 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 MOB4Q9Y3A3 225 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 C11orf86A6NJI1 115 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 E9PLD3 99 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 FSTL3O95633 263 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 TCL1BO95988 128 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 LGALS1P09382 135 aaKnown RBP4.18□□□□□ -1.74
LIMA1-203ENST00000547825 SAA4P35542 130 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 TAL2Q16559 108 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 MUSTN1Q8IVN3 82 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 C19orf84I3L1E1 186 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 OVOL1O14753 267 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 IGLV2-23P01705 113 aa4.18□□□□□ -1.74
LIMA1-203ENST00000547825 CR1P17927 2039 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 PAX4O43316 350 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 HOXD3P31249 432 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-203ENST00000547825 C9orf139Q6ZV77 190 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 IGF1P05019 195 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 CTSGP08311 255 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 CGB3P0DN86 165 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 CGB7P0DN87 165 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 XGP55808 180 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 ATP5J2P56134 94 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 KRTAP1-3Q8IUG1 177 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 UBE2E2Q96LR5 201 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 HIGD1BQ9P298 99 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 ITPR2Q14571 2701 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 TEX49A0A1B0GTD5 131 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 TINCRA0A1B0GVN0 87 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 H3BUX3 64 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 LY6G5BQ8NDX9 201 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 CLEC2BQ92478 149 aa4.17□□□□□ -1.74
LIMA1-203ENST00000547825 CENPEQ02224 2701 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 UNC79Q9P2D8 2635 aa4.16□□□□□ -1.74
LIMA1-203ENST00000547825 TRGV2A0A075B6R0 118 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms