RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 CHAC1Q9BUX1 264 aa12.87□□□□□ -0.35
TNFRSF1B-204ENST00000536782 TRBV6-8A0A0A6YYG3 113 aa12.86□□□□□ -0.35
TNFRSF1B-204ENST00000536782 BAGE2Q86Y30 109 aa12.86□□□□□ -0.35
TNFRSF1B-204ENST00000536782 MLST8Q9BVC4 326 aa12.86□□□□□ -0.35
TNFRSF1B-204ENST00000536782 C1orf43Q9BWL3 253 aa12.86□□□□□ -0.35
TNFRSF1B-204ENST00000536782 ZNF56Q15929 161 aa12.85□□□□□ -0.35
TNFRSF1B-204ENST00000536782 C14orf177Q52M58 125 aa12.85□□□□□ -0.35
TNFRSF1B-204ENST00000536782 A0A1B0GVG6 124 aa12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 CRPP02741 224 aa12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 TAGLN2P37802 199 aaKnown RBP12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 RPL35P42766 123 aaKnown RBP12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 RPL19P84098 196 aaKnown RBP12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 MEF2BQ02080 365 aaPredicted RBP12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 NEXN-AS1Q8NBZ9 246 aa12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 OR10AG1Q8NH19 301 aa12.84□□□□□ -0.35
TNFRSF1B-204ENST00000536782 PDE6DO43924 150 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 CXCL1P09341 107 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 BCL2P10415 239 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 PRR27Q6MZM9 219 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 ENHOQ6UWT2 76 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 C15orf54Q8N8G6 183 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 CIRBP-AS1Q8TBR5 109 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 FAT3Q8TDW7 4589 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 HMCN2Q8NDA2 5059 aa12.83□□□□□ -0.36
TNFRSF1B-204ENST00000536782 MPV17L2Q567V2 206 aa12.82□□□□□ -0.36
TNFRSF1B-204ENST00000536782 SNAI2O43623 268 aa12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 ANGP03950 147 aaKnown RBP12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 PKIAP61925 76 aa12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 SPANXN1Q5VSR9 72 aa12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 SMIM12Q96EX1 92 aa12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 CHCHD5Q9BSY4 110 aa12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 SSBP4Q9BWG4 385 aaPredicted RBP12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 VAX2Q9UIW0 290 aa12.81□□□□□ -0.36
TNFRSF1B-204ENST00000536782 F5H697 171 aa12.8□□□□□ -0.36
TNFRSF1B-204ENST00000536782 OR5AL1P0C617 328 aa12.8□□□□□ -0.36
TNFRSF1B-204ENST00000536782 BLOC1S1P78537 153 aa12.8□□□□□ -0.36
TNFRSF1B-204ENST00000536782 DERL1Q9BUN8 251 aa12.8□□□□□ -0.36
TNFRSF1B-204ENST00000536782 MUC21A0A0G2JKD1 596 aa12.79□□□□□ -0.36
TNFRSF1B-204ENST00000536782 MUC21A0A140T8X8 626 aa12.79□□□□□ -0.36
TNFRSF1B-204ENST00000536782 KRTAP10-4P60372 401 aaPredicted RBP12.79□□□□□ -0.36
TNFRSF1B-204ENST00000536782 TMEM97Q5BJF2 176 aa12.79□□□□□ -0.36
TNFRSF1B-204ENST00000536782 CENPWQ5EE01 88 aa12.79□□□□□ -0.36
TNFRSF1B-204ENST00000536782 ALKAL2Q6UX46 152 aa12.79□□□□□ -0.36
TNFRSF1B-204ENST00000536782 IGLV2-8P01709 118 aa12.78□□□□□ -0.36
TNFRSF1B-204ENST00000536782 NKX2-5P52952 324 aaPredicted RBP12.78□□□□□ -0.36
TNFRSF1B-204ENST00000536782 MIAQ16674 131 aa12.78□□□□□ -0.36
TNFRSF1B-204ENST00000536782 PKHD1L1Q86WI1 4243 aa12.78□□□□□ -0.36
TNFRSF1B-204ENST00000536782 USP17L23D6RBM5 183 aa12.77□□□□□ -0.37
TNFRSF1B-204ENST00000536782 HLA-DQA1P01909 254 aa12.77□□□□□ -0.37
TNFRSF1B-204ENST00000536782 SMIM17P0DL12 118 aa12.77□□□□□ -0.37
TNFRSF1B-204ENST00000536782 SSTP61278 116 aa12.77□□□□□ -0.37
TNFRSF1B-204ENST00000536782 LYPD6BQ8NI32 183 aa12.77□□□□□ -0.37
TNFRSF1B-204ENST00000536782 MED9Q9NWA0 146 aa12.77□□□□□ -0.37
TNFRSF1B-204ENST00000536782 GNG4P50150 75 aa12.76□□□□□ -0.37
TNFRSF1B-204ENST00000536782 NTM-AS1Q6ZSK4 140 aa12.76□□□□□ -0.37
TNFRSF1B-204ENST00000536782 AP1S3Q96PC3 154 aa12.75□□□□□ -0.37
TNFRSF1B-204ENST00000536782 BIN3Q9NQY0 253 aa12.75□□□□□ -0.37
TNFRSF1B-204ENST00000536782 KIF25-AS1Q9Y6Z4 181 aa12.75□□□□□ -0.37
TNFRSF1B-204ENST00000536782 OXTP01178 125 aa12.74□□□□□ -0.37
TNFRSF1B-204ENST00000536782 PRR34Q9NV39 138 aa12.74□□□□□ -0.37
TNFRSF1B-204ENST00000536782 UBR4Q5T4S7 5183 aa12.74□□□□□ -0.37
TNFRSF1B-204ENST00000536782 TRBV25-1A0A075B6N4 114 aa12.73□□□□□ -0.37
TNFRSF1B-204ENST00000536782 RAB19A4D1S5 217 aa12.73□□□□□ -0.37
TNFRSF1B-204ENST00000536782 PRSS1P07477 247 aa12.73□□□□□ -0.37
TNFRSF1B-204ENST00000536782 RBX1P62877 108 aa12.73□□□□□ -0.37
TNFRSF1B-204ENST00000536782 DGAT2L7PQ6IED9 249 aa12.73□□□□□ -0.37
TNFRSF1B-204ENST00000536782 DAZAP1Q96EP5 407 aaKnown RBP12.73□□□□□ -0.37
TNFRSF1B-204ENST00000536782 TRBV20OR9-2A0A075B6H5 130 aa12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 C19orf71A6NCJ1 209 aa12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 RPS20P60866 119 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 GAGE6Q13070 117 aa12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 SERTAD4-AS1Q5TG53 156 aa12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 CLPSL2Q6UWE3 100 aa12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 LINC00269Q8N2A0 174 aa12.72□□□□□ -0.37
TNFRSF1B-204ENST00000536782 TMEM250H0YL14 139 aa12.71□□□□□ -0.37
TNFRSF1B-204ENST00000536782 NDUFS6O75380 124 aaKnown RBP12.7□□□□□ -0.38
TNFRSF1B-204ENST00000536782 RPL37AP61513 92 aaKnown RBP12.7□□□□□ -0.38
TNFRSF1B-204ENST00000536782 IQCJQ1A5X6 159 aa12.7□□□□□ -0.38
TNFRSF1B-204ENST00000536782 C9orf163Q8N9P6 203 aa12.7□□□□□ -0.38
TNFRSF1B-204ENST00000536782 IGHV1-24A0A0C4DH33 117 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 XKRY2A2RUG3 117 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 H7C1H1 209 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 M0QY20 66 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 MGPP08493 103 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 KRTAP26-1Q6PEX3 210 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 TPPP3Q9BW30 176 aa12.69□□□□□ -0.38
TNFRSF1B-204ENST00000536782 P01737 135 aa12.68□□□□□ -0.38
TNFRSF1B-204ENST00000536782 IGLC6P0CF74 106 aa12.68□□□□□ -0.38
TNFRSF1B-204ENST00000536782 GZMBP10144 247 aa12.68□□□□□ -0.38
TNFRSF1B-204ENST00000536782 FER1L6-AS1Q8NA97 138 aa12.68□□□□□ -0.38
TNFRSF1B-204ENST00000536782 OR2D3Q8NGH3 330 aa12.68□□□□□ -0.38
TNFRSF1B-204ENST00000536782 REG3AQ06141 175 aa12.67□□□□□ -0.38
TNFRSF1B-204ENST00000536782 CLRN3Q8NCR9 226 aa12.67□□□□□ -0.38
TNFRSF1B-204ENST00000536782 CACNG7P62955 275 aa12.66□□□□□ -0.38
TNFRSF1B-204ENST00000536782 SUMO4Q6EEV6 95 aa12.66□□□□□ -0.38
TNFRSF1B-204ENST00000536782 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.66□□□□□ -0.38
TNFRSF1B-204ENST00000536782 IGLV10-54A0A075B6I4 117 aa12.65□□□□□ -0.38
TNFRSF1B-204ENST00000536782 FAM210AQ96ND0 272 aa12.65□□□□□ -0.38
TNFRSF1B-204ENST00000536782 F2Z2F3 143 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms