RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SCXQ7RTU7 201 aa9.67□□□□□ -0.86
VPS28-215ENST00000531924 NEXN-AS1Q8NBZ9 246 aa9.67□□□□□ -0.86
VPS28-215ENST00000531924 DEFB104AQ8WTQ1 72 aa9.67□□□□□ -0.86
VPS28-215ENST00000531924 ATRAIDQ6UW56 229 aa9.66□□□□□ -0.86
VPS28-215ENST00000531924 CHAC1Q9BUX1 264 aa9.66□□□□□ -0.86
VPS28-215ENST00000531924 HMSDA8MTL9 139 aa9.65□□□□□ -0.86
VPS28-215ENST00000531924 BCL2L11O43521 198 aa9.65□□□□□ -0.86
VPS28-215ENST00000531924 OR5AL1P0C617 328 aa9.65□□□□□ -0.86
VPS28-215ENST00000531924 DAZAP1Q96EP5 407 aaKnown RBP9.65□□□□□ -0.86
VPS28-215ENST00000531924 AP1S3Q96PC3 154 aa9.65□□□□□ -0.86
VPS28-215ENST00000531924 MLST8Q9BVC4 326 aa9.65□□□□□ -0.86
VPS28-215ENST00000531924 TPPP3Q9BW30 176 aa9.65□□□□□ -0.86
VPS28-215ENST00000531924 SNAI2O43623 268 aa9.64□□□□□ -0.87
VPS28-215ENST00000531924 HLA-DQA1P01909 254 aa9.64□□□□□ -0.87
VPS28-215ENST00000531924 RPL35P42766 123 aaKnown RBP9.64□□□□□ -0.87
VPS28-215ENST00000531924 MPV17L2Q567V2 206 aa9.64□□□□□ -0.87
VPS28-215ENST00000531924 ENHOQ6UWT2 76 aa9.64□□□□□ -0.87
VPS28-215ENST00000531924 SSBP4Q9BWG4 385 aaPredicted RBP9.64□□□□□ -0.87
VPS28-215ENST00000531924 GNG13Q9P2W3 67 aa9.64□□□□□ -0.87
VPS28-215ENST00000531924 TEX46H3BTG2 121 aa9.63□□□□□ -0.87
VPS28-215ENST00000531924 MIAQ16674 131 aa9.63□□□□□ -0.87
VPS28-215ENST00000531924 DERL1Q9BUN8 251 aa9.63□□□□□ -0.87
VPS28-215ENST00000531924 MANBALQ9NQG1 85 aa9.63□□□□□ -0.87
VPS28-215ENST00000531924 TRBV25-1A0A075B6N4 114 aa9.62□□□□□ -0.87
VPS28-215ENST00000531924 H7C1H1 209 aa9.62□□□□□ -0.87
VPS28-215ENST00000531924 MGPP08493 103 aa9.62□□□□□ -0.87
VPS28-215ENST00000531924 RPS20P60866 119 aaKnown RBP9.62□□□□□ -0.87
VPS28-215ENST00000531924 GAGE6Q13070 117 aa9.62□□□□□ -0.87
VPS28-215ENST00000531924 USP17L23D6RBM5 183 aa9.61□□□□□ -0.87
VPS28-215ENST00000531924 CIRBP-AS1Q8TBR5 109 aa9.61□□□□□ -0.87
VPS28-215ENST00000531924 XKRY2A2RUG3 117 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 RBX1P62877 108 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 CENPWQ5EE01 88 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 EIF5AL1Q6IS14 154 aaKnown RBP9.6□□□□□ -0.87
VPS28-215ENST00000531924 CLPSL2Q6UWE3 100 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 LINC00269Q8N2A0 174 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 FER1L6-AS1Q8NA97 138 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 OR2D3Q8NGH3 330 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 VAX2Q9UIW0 290 aa9.6□□□□□ -0.87
VPS28-215ENST00000531924 IGHV1-24A0A0C4DH33 117 aa9.59□□□□□ -0.87
VPS28-215ENST00000531924 KRTAP29-1A8MX34 341 aaPredicted RBP9.59□□□□□ -0.87
VPS28-215ENST00000531924 GZMBP10144 247 aa9.59□□□□□ -0.87
VPS28-215ENST00000531924 GNG4P50150 75 aa9.59□□□□□ -0.87
VPS28-215ENST00000531924 RAB5CP51148 216 aa9.59□□□□□ -0.87
VPS28-215ENST00000531924 CACNG7P62955 275 aa9.59□□□□□ -0.87
VPS28-215ENST00000531924 NTM-AS1Q6ZSK4 140 aa9.59□□□□□ -0.87
VPS28-215ENST00000531924 IGLV2-8P01709 118 aa9.58□□□□□ -0.88
VPS28-215ENST00000531924 CCL20P78556 96 aa9.58□□□□□ -0.88
VPS28-215ENST00000531924 DGAT2L7PQ6IED9 249 aa9.58□□□□□ -0.88
VPS28-215ENST00000531924 C11orf52Q96A22 123 aa9.58□□□□□ -0.88
VPS28-215ENST00000531924 KIF25-AS1Q9Y6Z4 181 aa9.58□□□□□ -0.88
VPS28-215ENST00000531924 F2Z2F3 143 aa9.57□□□□□ -0.88
VPS28-215ENST00000531924 M0QY20 66 aa9.57□□□□□ -0.88
VPS28-215ENST00000531924 IFNA1P01562 189 aa9.57□□□□□ -0.88
VPS28-215ENST00000531924 P01737 135 aa9.57□□□□□ -0.88
VPS28-215ENST00000531924 IQCJQ1A5X6 159 aa9.57□□□□□ -0.88
VPS28-215ENST00000531924 BIN3Q9NQY0 253 aa9.57□□□□□ -0.88
VPS28-215ENST00000531924 TRAV1-1A0A0B4J248 108 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 RAB19A4D1S5 217 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 PDE6DO43924 150 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 PRSS1P07477 247 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 TRGC1P0CF51 173 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 NKX2-5P52952 324 aaPredicted RBP9.56□□□□□ -0.88
VPS28-215ENST00000531924 SUMO4Q6EEV6 95 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 PRR34Q9NV39 138 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 MED9Q9NWA0 146 aa9.56□□□□□ -0.88
VPS28-215ENST00000531924 IGLV10-54A0A075B6I4 117 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 UBE2L6O14933 153 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 IGLC6P0CF74 106 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 RPL37AP61513 92 aaKnown RBP9.55□□□□□ -0.88
VPS28-215ENST00000531924 MEF2BQ02080 365 aaPredicted RBP9.55□□□□□ -0.88
VPS28-215ENST00000531924 REG3AQ06141 175 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 RASL11AQ6T310 242 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 CLRN3Q8NCR9 226 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 SMIM12Q96EX1 92 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 TMEM243Q9BU79 118 aa9.55□□□□□ -0.88
VPS28-215ENST00000531924 TRAV8-4A0A0B4J246 113 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 hDV102S1A0JD36 115 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 C19orf71A6NCJ1 209 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 OXTP01178 125 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 LYZL1Q6UWQ5 148 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 C9orf163Q8N9P6 203 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 DPH3Q96FX2 82 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 DPH3P1Q9H4G8 78 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 NIT2Q9NQR4 276 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 AP5S1Q9NUS5 200 aa9.53□□□□□ -0.88
VPS28-215ENST00000531924 TWIST1Q15672 202 aa9.52□□□□□ -0.89
VPS28-215ENST00000531924 WDR73Q6P4I2 378 aa9.52□□□□□ -0.89
VPS28-215ENST00000531924 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.51□□□□□ -0.89
VPS28-215ENST00000531924 NTF3P20783 257 aa9.51□□□□□ -0.89
VPS28-215ENST00000531924 AMTP48728 403 aa9.51□□□□□ -0.89
VPS28-215ENST00000531924 SULT1A2P50226 295 aa9.51□□□□□ -0.89
VPS28-215ENST00000531924 COTL1Q14019 142 aa9.51□□□□□ -0.89
VPS28-215ENST00000531924 SERTAD4-AS1Q5TG53 156 aa9.51□□□□□ -0.89
VPS28-215ENST00000531924 A0A1B0GUV1 79 aa9.5□□□□□ -0.89
VPS28-215ENST00000531924 BCL2P10415 239 aa9.5□□□□□ -0.89
VPS28-215ENST00000531924 TAGLN2P37802 199 aaKnown RBP9.5□□□□□ -0.89
VPS28-215ENST00000531924 SMIM15Q7Z3B0 74 aa9.5□□□□□ -0.89
VPS28-215ENST00000531924 C20orf203Q8NBC4 194 aa9.5□□□□□ -0.89
VPS28-215ENST00000531924 PGLYRP4Q96LB8 373 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms