RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 UBE2D3P61077 147 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 UBE2D2P62837 147 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 MEF2BQ02080 365 aaPredicted RBP7.43□□□□□ -1.22
VPS28-214ENST00000531032 DERL1Q9BUN8 251 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 MLST8Q9BVC4 326 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 TPPP3Q9BW30 176 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 TRBV7-3A0A075B6L6 115 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 A0A087WX48 190 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 SMIM17P0DL12 118 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 BCL2P10415 239 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 KRTAP10-4P60372 401 aaPredicted RBP7.42□□□□□ -1.22
VPS28-214ENST00000531032 SSTP61278 116 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 RPL36AP83881 106 aaKnown RBP7.42□□□□□ -1.22
VPS28-214ENST00000531032 ELOBQ15370 118 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 KCNIP4Q6PIL6 250 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 OR10AG1Q8NH19 301 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 RPL36ALQ969Q0 106 aaKnown RBP7.42□□□□□ -1.22
VPS28-214ENST00000531032 UBE2WQ96B02 151 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 CHAC1Q9BUX1 264 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 MED9Q9NWA0 146 aa7.42□□□□□ -1.22
VPS28-214ENST00000531032 MUC21A0A0G2JKD1 596 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 MUC21A0A140T8X8 626 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 XKRY2A2RUG3 117 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 TAGLN2P37802 199 aaKnown RBP7.41□□□□□ -1.22
VPS28-214ENST00000531032 RPS20P60866 119 aaKnown RBP7.41□□□□□ -1.22
VPS28-214ENST00000531032 Q0VG73 95 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.41□□□□□ -1.22
VPS28-214ENST00000531032 OR2D3Q8NGH3 330 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 OR10G8Q8NGN5 311 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 AP1S3Q96PC3 154 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 BIN3Q9NQY0 253 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 VAX2Q9UIW0 290 aa7.41□□□□□ -1.22
VPS28-214ENST00000531032 F5H697 171 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 SNAI2O43623 268 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 P01737 135 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 OR5AL1P0C617 328 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 ALKAL2Q6UX46 152 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 CIRBP-AS1Q8TBR5 109 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 SMIM12Q96EX1 92 aa7.4□□□□□ -1.22
VPS28-214ENST00000531032 TRBV6-8A0A0A6YYG3 113 aa7.39□□□□□ -1.23
VPS28-214ENST00000531032 RAB19A4D1S5 217 aa7.39□□□□□ -1.23
VPS28-214ENST00000531032 RAB4BP61018 213 aa7.39□□□□□ -1.23
VPS28-214ENST00000531032 ENHOQ6UWT2 76 aa7.39□□□□□ -1.23
VPS28-214ENST00000531032 FER1L6-AS1Q8NA97 138 aa7.39□□□□□ -1.23
VPS28-214ENST00000531032 IGLV2-8P01709 118 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 MGPP08493 103 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 GZMBP10144 247 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 BLOC1S1P78537 153 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 C14orf177Q52M58 125 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 MPV17L2Q567V2 206 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 NEXN-AS1Q8NBZ9 246 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 C1orf43Q9BWL3 253 aa7.38□□□□□ -1.23
VPS28-214ENST00000531032 LRP1Q07954 4544 aaKnown RBP7.37□□□□□ -1.23
VPS28-214ENST00000531032 TMEM262E9PQX1 116 aa7.37□□□□□ -1.23
VPS28-214ENST00000531032 CRPP02741 224 aa7.37□□□□□ -1.23
VPS28-214ENST00000531032 CACNG7P62955 275 aa7.37□□□□□ -1.23
VPS28-214ENST00000531032 C15orf54Q8N8G6 183 aa7.37□□□□□ -1.23
VPS28-214ENST00000531032 SSBP4Q9BWG4 385 aaPredicted RBP7.37□□□□□ -1.23
VPS28-214ENST00000531032 C19orf71A6NCJ1 209 aa7.36□□□□□ -1.23
VPS28-214ENST00000531032 CEBPGP53567 150 aa7.36□□□□□ -1.23
VPS28-214ENST00000531032 PKIAP61925 76 aa7.36□□□□□ -1.23
VPS28-214ENST00000531032 TRBV20OR9-2A0A075B6H5 130 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 USP17L23D6RBM5 183 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 H7C1H1 209 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 OXTP01178 125 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 ANGP03950 147 aaKnown RBP7.35□□□□□ -1.23
VPS28-214ENST00000531032 TRGC1P0CF51 173 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 IGLC6P0CF74 106 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 MIAQ16674 131 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 SERTAD4-AS1Q5TG53 156 aa7.35□□□□□ -1.23
VPS28-214ENST00000531032 F2Z2F3 143 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 HLA-DQA1P01909 254 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 TMEM97Q5BJF2 176 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 TEX261Q6UWH6 196 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 NTM-AS1Q6ZSK4 140 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 CHCHD5Q9BSY4 110 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 RPP21Q9H633 154 aaKnown RBP7.34□□□□□ -1.23
VPS28-214ENST00000531032 PRR34Q9NV39 138 aa7.34□□□□□ -1.23
VPS28-214ENST00000531032 TMEM250H0YL14 139 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 PRSS1P07477 247 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 IFITM2Q01629 132 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 DGAT2L7PQ6IED9 249 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 KRTAP26-1Q6PEX3 210 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 LYZL1Q6UWQ5 148 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 EIF5A2Q9GZV4 153 aaKnown RBP7.33□□□□□ -1.24
VPS28-214ENST00000531032 KIF25-AS1Q9Y6Z4 181 aa7.33□□□□□ -1.24
VPS28-214ENST00000531032 TRBV25-1A0A075B6N4 114 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 RBX1P62877 108 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 SUMO4Q6EEV6 95 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 SMIM15Q7Z3B0 74 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 NUDT10Q8NFP7 164 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 LYPD6BQ8NI32 183 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 NUDT11Q96G61 164 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 RNASE7Q9H1E1 156 aaKnown RBP7.32□□□□□ -1.24
VPS28-214ENST00000531032 DPH3P1Q9H4G8 78 aa7.32□□□□□ -1.24
VPS28-214ENST00000531032 FAT3Q8TDW7 4589 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 K7EN84 100 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 GATCO43716 136 aaKnown RBP7.31□□□□□ -1.24
VPS28-214ENST00000531032 CTRLP40313 264 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 RPL37AP61513 92 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 171.4 ms