RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 IGLL5B9A064 214 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 C3orf84H3BNL1 204 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 PHOX2AO14813 284 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 NEXN-AS1Q8NBZ9 246 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 MRPL18Q9H0U6 180 aaKnown RBP9.7□□□□□ -0.86
C9orf3-221ENST00000489562 LAMTOR2Q9Y2Q5 125 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 TRAPPC1Q9Y5R8 145 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 TNFRSF18Q9Y5U5 241 aa9.7□□□□□ -0.86
C9orf3-221ENST00000489562 TRBV7-3A0A075B6L6 115 aa9.69□□□□□ -0.86
C9orf3-221ENST00000489562 D6R8Y8 96 aa9.69□□□□□ -0.86
C9orf3-221ENST00000489562 RAB5AP20339 215 aa9.69□□□□□ -0.86
C9orf3-221ENST00000489562 SRIP30626 198 aa9.69□□□□□ -0.86
C9orf3-221ENST00000489562 FABP9Q0Z7S8 132 aa9.69□□□□□ -0.86
C9orf3-221ENST00000489562 OR10J3Q5JRS4 329 aa9.69□□□□□ -0.86
C9orf3-221ENST00000489562 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.69□□□□□ -0.86
C9orf3-221ENST00000489562 TRBV6-5A0A0K0K1A5 114 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 NCR2O95944 276 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 P0DMU3 169 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 FAM231AP0DMU4 169 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 FAM231CP0DMU5 169 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 LINC00694P0DN24 101 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 RPS10P46783 165 aaKnown RBP9.68□□□□□ -0.86
C9orf3-221ENST00000489562 ZNRF2Q8NHG8 242 aa9.68□□□□□ -0.86
C9orf3-221ENST00000489562 A0A096LPF7 62 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 LOC100131303A0A0U1RQF7 123 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 GAGE12JA6NER3 117 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 NUDT3O95989 172 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 UBE2D3P61077 147 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 UBE2D2P62837 147 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 GAGE1Q13065 139 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 GAGE4Q13068 117 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 GAGE5Q13069 117 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 GAGE13Q4V321 117 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 ZFAND6Q6FIF0 208 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 NEGR1Q7Z3B1 354 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 NRACQ8N912 160 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 RPL39LQ96EH5 51 aaKnown RBP9.67□□□□□ -0.86
C9orf3-221ENST00000489562 PRELID3AQ96N28 172 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 ST20Q9HBF5 79 aa9.67□□□□□ -0.86
C9orf3-221ENST00000489562 SMKR1H3BMG3 65 aa9.66□□□□□ -0.86
C9orf3-221ENST00000489562 TNFRSF6BO95407 300 aa9.66□□□□□ -0.86
C9orf3-221ENST00000489562 DAZ4Q86SG3 579 aaKnown RBP9.66□□□□□ -0.86
C9orf3-221ENST00000489562 ATP6V0E2Q8NHE4 81 aa9.66□□□□□ -0.86
C9orf3-221ENST00000489562 C20orf78Q9BR46 151 aa9.66□□□□□ -0.86
C9orf3-221ENST00000489562 DAZ3Q9NR90 486 aaKnown RBP9.66□□□□□ -0.86
C9orf3-221ENST00000489562 NPYP01303 97 aa9.65□□□□□ -0.86
C9orf3-221ENST00000489562 SUMO2P61956 95 aaKnown RBP9.65□□□□□ -0.86
C9orf3-221ENST00000489562 RPL32P62910 135 aaKnown RBP9.65□□□□□ -0.86
C9orf3-221ENST00000489562 KIAA1644Q3SXP7 199 aa9.65□□□□□ -0.86
C9orf3-221ENST00000489562 Q9UF83 564 aa9.65□□□□□ -0.86
C9orf3-221ENST00000489562 APLNQ9ULZ1 77 aa9.65□□□□□ -0.86
C9orf3-221ENST00000489562 SDHAF1A6NFY7 115 aa9.64□□□□□ -0.87
C9orf3-221ENST00000489562 GAS8-AS1O95177 125 aa9.64□□□□□ -0.87
C9orf3-221ENST00000489562 TIRAPP58753 221 aa9.64□□□□□ -0.87
C9orf3-221ENST00000489562 TMEM97Q5BJF2 176 aa9.64□□□□□ -0.87
C9orf3-221ENST00000489562 ALKBH7Q9BT30 221 aaPredicted RBP9.64□□□□□ -0.87
C9orf3-221ENST00000489562 TRBV27A0A0K0K1C4 114 aa9.63□□□□□ -0.87
C9orf3-221ENST00000489562 PRSS47A8MTI9 375 aa9.63□□□□□ -0.87
C9orf3-221ENST00000489562 POLR2KP53803 58 aaKnown RBP9.63□□□□□ -0.87
C9orf3-221ENST00000489562 CASC10Q5T4H9 136 aa9.63□□□□□ -0.87
C9orf3-221ENST00000489562 TMEM70Q9BUB7 260 aa9.63□□□□□ -0.87
C9orf3-221ENST00000489562 GTSF1LQ9H1H1 148 aa9.63□□□□□ -0.87
C9orf3-221ENST00000489562 MAP1LC3AQ9H492 121 aa9.63□□□□□ -0.87
C9orf3-221ENST00000489562 VCYO14598 125 aa9.62□□□□□ -0.87
C9orf3-221ENST00000489562 TCAPO15273 167 aa9.62□□□□□ -0.87
C9orf3-221ENST00000489562 TRGC2P03986 189 aa9.62□□□□□ -0.87
C9orf3-221ENST00000489562 SMIM2Q9BVW6 85 aa9.62□□□□□ -0.87
C9orf3-221ENST00000489562 I3L3M4 83 aa9.61□□□□□ -0.87
C9orf3-221ENST00000489562 PMCHP20382 165 aa9.61□□□□□ -0.87
C9orf3-221ENST00000489562 CCL18P55774 89 aa9.61□□□□□ -0.87
C9orf3-221ENST00000489562 COTL1Q14019 142 aa9.61□□□□□ -0.87
C9orf3-221ENST00000489562 KIR2DL4Q99706 377 aa9.61□□□□□ -0.87
C9orf3-221ENST00000489562 LYPD5Q6UWN5 251 aa9.6□□□□□ -0.87
C9orf3-221ENST00000489562 NXT2Q9NPJ8 142 aaKnown RBP9.6□□□□□ -0.87
C9orf3-221ENST00000489562 IGHV3-38A0A0C4DH36 116 aa9.59□□□□□ -0.87
C9orf3-221ENST00000489562 K7EMI3 77 aa9.59□□□□□ -0.87
C9orf3-221ENST00000489562 LELP1Q5T871 98 aa9.59□□□□□ -0.87
C9orf3-221ENST00000489562 DNAH7Q8WXX0 4024 aa9.58□□□□□ -0.88
C9orf3-221ENST00000489562 ESRGQ1W209 222 aa9.58□□□□□ -0.88
C9orf3-221ENST00000489562 Q8N8P6 123 aa9.58□□□□□ -0.88
C9orf3-221ENST00000489562 C18orf32Q8TCD1 76 aa9.58□□□□□ -0.88
C9orf3-221ENST00000489562 TRBV25-1A0A075B6N4 114 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 TRBV6-8A0A0A6YYG3 113 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 TRAV8-6A0A0B4J262 113 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 IGHV1-24A0A0C4DH33 117 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 LOC389332A0A1B0GUA5 103 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 FCER1GP30273 86 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 IQCJQ1A5X6 159 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 PRSS3P2Q8NHM4 247 aa9.57□□□□□ -0.88
C9orf3-221ENST00000489562 MRPS16Q9Y3D3 137 aaKnown RBP9.57□□□□□ -0.88
C9orf3-221ENST00000489562 IGLV2-18A0A075B6J9 118 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 TSHBP01222 138 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 AMTP48728 403 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 RAB5BP61020 215 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 PKIAP61925 76 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 UBE2DNLQ8IWF7 75 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 LINC00588Q9Y4M8 146 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 TENM2Q9NT68 2774 aa9.56□□□□□ -0.88
C9orf3-221ENST00000489562 C1orf196B1AJZ1 125 aa9.55□□□□□ -0.88
C9orf3-221ENST00000489562 IFI27P40305 119 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 188.5 ms