RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 SLC25A29Q8N8R3 303 aa13.59□□□□□ -0.23
RPS28-202ENST00000449223 C20orf78Q9BR46 151 aa13.59□□□□□ -0.23
RPS28-202ENST00000449223 NIT2Q9NQR4 276 aa13.59□□□□□ -0.23
RPS28-202ENST00000449223 TRGV4A0A0C4DH28 118 aa13.58□□□□□ -0.24
RPS28-202ENST00000449223 K7EQD1 137 aa13.58□□□□□ -0.24
RPS28-202ENST00000449223 HOXA5P20719 270 aa13.58□□□□□ -0.24
RPS28-202ENST00000449223 RPL32P62910 135 aaKnown RBP13.58□□□□□ -0.24
RPS28-202ENST00000449223 C11orf45Q8TAV5 145 aa13.58□□□□□ -0.24
RPS28-202ENST00000449223 RPL39LQ96EH5 51 aaKnown RBP13.57□□□□□ -0.24
RPS28-202ENST00000449223 SUMO2P61956 95 aaKnown RBP13.56□□□□□ -0.24
RPS28-202ENST00000449223 DNAJC30Q96LL9 226 aa13.56□□□□□ -0.24
RPS28-202ENST00000449223 PRO0255Q9UI72 69 aa13.56□□□□□ -0.24
RPS28-202ENST00000449223 RHOHQ15669 191 aa13.55□□□□□ -0.24
RPS28-202ENST00000449223 COA6Q5JTJ3 125 aaKnown RBP13.55□□□□□ -0.24
RPS28-202ENST00000449223 HHLA3Q9XRX5 114 aa13.55□□□□□ -0.24
RPS28-202ENST00000449223 CRYBA4P53673 196 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 Q6ZTC4 211 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 NEXN-AS1Q8NBZ9 246 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 MAP1LC3AQ9H492 121 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 P0DMU3 169 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 FAM231AP0DMU4 169 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 FAM231CP0DMU5 169 aa13.54□□□□□ -0.24
RPS28-202ENST00000449223 POLR2KP53803 58 aaKnown RBP13.54□□□□□ -0.24
RPS28-202ENST00000449223 IGLV2-18A0A075B6J9 118 aa13.53□□□□□ -0.24
RPS28-202ENST00000449223 NANOS2P60321 138 aaKnown RBP13.53□□□□□ -0.24
RPS28-202ENST00000449223 TMEM70Q9BUB7 260 aa13.53□□□□□ -0.24
RPS28-202ENST00000449223 SMIM2Q9BVW6 85 aa13.53□□□□□ -0.24
RPS28-202ENST00000449223 ST20Q9HBF5 79 aa13.53□□□□□ -0.24
RPS28-202ENST00000449223 Q9UF83 564 aa13.53□□□□□ -0.24
RPS28-202ENST00000449223 TRBV7-3A0A075B6L6 115 aa13.52□□□□□ -0.25
RPS28-202ENST00000449223 TRBV27A0A0K0K1C4 114 aa13.52□□□□□ -0.25
RPS28-202ENST00000449223 SDHAF1A6NFY7 115 aa13.52□□□□□ -0.25
RPS28-202ENST00000449223 LINC01546A6NGU7 62 aa13.52□□□□□ -0.25
RPS28-202ENST00000449223 IQCJQ1A5X6 159 aa13.52□□□□□ -0.25
RPS28-202ENST00000449223 PRADC1Q9BSG0 188 aa13.52□□□□□ -0.25
RPS28-202ENST00000449223 NXT2Q9NPJ8 142 aaKnown RBP13.52□□□□□ -0.25
RPS28-202ENST00000449223 LINC00694P0DN24 101 aa13.51□□□□□ -0.25
RPS28-202ENST00000449223 URB1-AS1Q96HZ7 61 aa13.51□□□□□ -0.25
RPS28-202ENST00000449223 F5H768 121 aa13.5□□□□□ -0.25
RPS28-202ENST00000449223 H3BNG1 76 aa13.5□□□□□ -0.25
RPS28-202ENST00000449223 LINC00310P59036 64 aa13.5□□□□□ -0.25
RPS28-202ENST00000449223 RPL36AP83881 106 aaKnown RBP13.5□□□□□ -0.25
RPS28-202ENST00000449223 Q8N8P6 123 aa13.5□□□□□ -0.25
RPS28-202ENST00000449223 RPL36ALQ969Q0 106 aaKnown RBP13.5□□□□□ -0.25
RPS28-202ENST00000449223 TNFRSF18Q9Y5U5 241 aa13.5□□□□□ -0.25
RPS28-202ENST00000449223 K7EMI3 77 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 PMCHP20382 165 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 IFI27P40305 119 aaPredicted RBP13.49□□□□□ -0.25
RPS28-202ENST00000449223 BAGE3Q86Y29 109 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 VSIG2Q96IQ7 327 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 VCYO14598 125 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 PAX4O43316 350 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 ESDP10768 282 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 UBE2D3P61077 147 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 UBE2D2P62837 147 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 PRSS3P2Q8NHM4 247 aa13.49□□□□□ -0.25
RPS28-202ENST00000449223 TMA7Q9Y2S6 64 aaKnown RBP13.49□□□□□ -0.25
RPS28-202ENST00000449223 LOC389332A0A1B0GUA5 103 aa13.48□□□□□ -0.25
RPS28-202ENST00000449223 LINC00614P0C842 121 aa13.48□□□□□ -0.25
RPS28-202ENST00000449223 NIT1Q86X76 327 aa13.48□□□□□ -0.25
RPS28-202ENST00000449223 ZNRF2Q8NHG8 242 aa13.48□□□□□ -0.25
RPS28-202ENST00000449223 CHCHD1Q96BP2 118 aaKnown RBP13.48□□□□□ -0.25
RPS28-202ENST00000449223 TRAV26-1A0A087WT03 109 aa13.47□□□□□ -0.25
RPS28-202ENST00000449223 TRAV10A0A0B4J240 114 aa13.47□□□□□ -0.25
RPS28-202ENST00000449223 SERF1AO75920 110 aa13.47□□□□□ -0.25
RPS28-202ENST00000449223 NDUFA6P56556 154 aa13.47□□□□□ -0.25
RPS28-202ENST00000449223 DEFB131BA0A096LNP1 70 aa13.46□□□□□ -0.25
RPS28-202ENST00000449223 I3L3M4 83 aa13.46□□□□□ -0.25
RPS28-202ENST00000449223 S100A6P06703 90 aa13.46□□□□□ -0.25
RPS28-202ENST00000449223 HTN3P15516 51 aa13.46□□□□□ -0.25
RPS28-202ENST00000449223 DAZ4Q86SG3 579 aaKnown RBP13.46□□□□□ -0.25
RPS28-202ENST00000449223 DAZ3Q9NR90 486 aaKnown RBP13.46□□□□□ -0.25
RPS28-202ENST00000449223 AP5S1Q9NUS5 200 aa13.46□□□□□ -0.25
RPS28-202ENST00000449223 LOC100131303A0A0U1RQF7 123 aa13.45□□□□□ -0.26
RPS28-202ENST00000449223 C5orf52A6NGY3 159 aa13.45□□□□□ -0.26
RPS28-202ENST00000449223 TCAPO15273 167 aa13.45□□□□□ -0.26
RPS28-202ENST00000449223 GYPEP15421 78 aa13.45□□□□□ -0.26
RPS28-202ENST00000449223 FA2HQ7L5A8 372 aa13.45□□□□□ -0.26
RPS28-202ENST00000449223 KIR2DL4Q99706 377 aa13.45□□□□□ -0.26
RPS28-202ENST00000449223 GAGE12JA6NER3 117 aa13.44□□□□□ -0.26
RPS28-202ENST00000449223 GAGE1Q13065 139 aa13.44□□□□□ -0.26
RPS28-202ENST00000449223 GAGE4Q13068 117 aa13.44□□□□□ -0.26
RPS28-202ENST00000449223 GAGE5Q13069 117 aa13.44□□□□□ -0.26
RPS28-202ENST00000449223 GAGE13Q4V321 117 aa13.44□□□□□ -0.26
RPS28-202ENST00000449223 NUPR1O60356 82 aa13.43□□□□□ -0.26
RPS28-202ENST00000449223 A0A0J9YY99 117 aa13.42□□□□□ -0.26
RPS28-202ENST00000449223 TSHBP01222 138 aa13.42□□□□□ -0.26
RPS28-202ENST00000449223 MRPL23Q16540 153 aaKnown RBP13.42□□□□□ -0.26
RPS28-202ENST00000449223 ORMDL2Q53FV1 153 aa13.42□□□□□ -0.26
RPS28-202ENST00000449223 RNASEKQ6P5S7 137 aaKnown RBP13.42□□□□□ -0.26
RPS28-202ENST00000449223 NEGR1Q7Z3B1 354 aa13.42□□□□□ -0.26
RPS28-202ENST00000449223 SH2D6Q7Z4S9 175 aa13.42□□□□□ -0.26
RPS28-202ENST00000449223 LAGE3Q14657 143 aa13.41□□□□□ -0.26
RPS28-202ENST00000449223 GTSF1LQ9H1H1 148 aa13.41□□□□□ -0.26
RPS28-202ENST00000449223 ICOSQ9Y6W8 199 aa13.41□□□□□ -0.26
RPS28-202ENST00000449223 HSBP1O75506 76 aa13.4□□□□□ -0.26
RPS28-202ENST00000449223 SNRPEP62304 92 aaKnown RBP13.4□□□□□ -0.26
RPS28-202ENST00000449223 PHLDA1Q8WV24 401 aaPredicted RBP13.4□□□□□ -0.26
RPS28-202ENST00000449223 A0A096LPF7 62 aa13.39□□□□□ -0.27
RPS28-202ENST00000449223 COTL1Q14019 142 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 180 ms