RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LGALS1P09382 135 aaKnown RBP6.52□□□□□ -1.37
USP40-203ENST00000427112 LMO4P61968 165 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 PMVKQ15126 192 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 C5orf56Q8N8D9 126 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 NTN5Q8WTR8 489 aaPredicted RBP6.52□□□□□ -1.37
USP40-203ENST00000427112 PHLDA1Q8WV24 401 aaPredicted RBP6.52□□□□□ -1.37
USP40-203ENST00000427112 BAALCQ8WXS3 180 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 AJUBAQ96IF1 538 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 IGLV2-18A0A075B6J9 118 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 AVPP01185 164 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 COX6CP09669 75 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 SYNJ2BPP57105 145 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 GPHB5Q86YW7 130 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 Q8N6K4 173 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 ZFAND2AQ8N6M9 145 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 SLC50A1Q9BRV3 221 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 SPXQ9BT56 116 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 H7C1H1 209 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 UBE2E1P51965 193 aa6.52□□□□□ -1.37
USP40-203ENST00000427112 MYMXA0A1B0GTQ4 84 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 F8VRH5 84 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 TSPEAR-AS2P59090 65 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 PPDPFLQ8WWR9 84 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 ITPR3Q14573 2671 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 IGHV4-30-2A0A087WSY4 118 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 TRPT1Q86TN4 253 aaKnown RBP6.51□□□□□ -1.37
USP40-203ENST00000427112 IGKV3OR2-268A0A0C4DH90 116 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 SDHAF1A6NFY7 115 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 C11orf71Q6IPW1 123 aa6.51□□□□□ -1.37
USP40-203ENST00000427112 TRAV21A0A0B4J279 112 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 A0A0U1RQV1 116 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 IGHV4-59P01825 116 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 GAGE2AQ6NT46 116 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 C18orf65Q6ZTR6 163 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 DPH3P1Q9H4G8 78 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 A0A1W2PRX2 142 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 RNASE3P12724 160 aaKnown RBP6.5□□□□□ -1.37
USP40-203ENST00000427112 SUMO4Q6EEV6 95 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 FOXI2Q6ZQN5 318 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 Q6ZUT4 128 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 TRAV8-3A0A0A6YYJ7 113 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 C2orf82Q6UX34 121 aa6.5□□□□□ -1.37
USP40-203ENST00000427112 LGALS3P17931 250 aaKnown RBP6.49□□□□□ -1.37
USP40-203ENST00000427112 HIST1H4AP62805 103 aaKnown RBP6.49□□□□□ -1.37
USP40-203ENST00000427112 FOXI1Q12951 378 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 S100A7L2Q5SY68 101 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 MINOS1Q5TGZ0 78 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 A0A0J9YXV3 536 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 TRBV6-1A0A0K0K1D8 114 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 RBAKDNA6NC62 111 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 IGHV3-53P01767 116 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 CRIP2P52943 208 aaPredicted RBP6.49□□□□□ -1.37
USP40-203ENST00000427112 RRN3P1Q2M238 152 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 ZNF876PQ49A33 203 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 CHCHD5Q9BSY4 110 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 SPANXB1Q9NS25 103 aaPredicted RBP6.49□□□□□ -1.37
USP40-203ENST00000427112 MOB4Q9Y3A3 225 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 MINOS1-NBL1R4GNA1 71 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 HECTD1Q9ULT8 2610 aa6.49□□□□□ -1.37
USP40-203ENST00000427112 XGP55808 180 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 MORN3Q6PF18 240 aaPredicted RBP6.48□□□□□ -1.37
USP40-203ENST00000427112 PIFOQ8TCI5 191 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 MRAPQ8TCY5 172 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 TRBV7-1A0A0A6YYK4 115 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 TSHBP01222 138 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 Q8N1Y9 231 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 ZNRF2Q8NHG8 242 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 PPDPFQ9H3Y8 114 aa6.48□□□□□ -1.37
USP40-203ENST00000427112 IGHV1-69DA0A0B4J2H0 117 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 E9PLD3 99 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 IGHV1-69P01742 117 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 NFE4Q86UQ8 179 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 FASNP49327 2511 aaKnown RBP6.47□□□□□ -1.37
USP40-203ENST00000427112 PLNP26678 52 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 CCL19Q99731 98 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 ERG28Q9UKR5 140 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 SETXQ7Z333 2677 aaKnown RBP6.47□□□□□ -1.37
USP40-203ENST00000427112 C9orf47Q6ZRZ4 202 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 APRG1Q8IVJ8 170 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 NEXN-AS1Q8NBZ9 246 aa6.47□□□□□ -1.37
USP40-203ENST00000427112 AKAP9Q99996 3911 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.46□□□□□ -1.37
USP40-203ENST00000427112 FAM236AA0A1B0GUQ0 79 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 FAM236BA0A1B0GV22 79 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 IGKV2-29A2NJV5 120 aaPredicted RBP6.46□□□□□ -1.37
USP40-203ENST00000427112 CRYGDP07320 174 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 ORMDL2Q53FV1 153 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 C9orf139Q6ZV77 190 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 UBE2E2Q96LR5 201 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 ZMAT4Q9H898 229 aa6.46□□□□□ -1.37
USP40-203ENST00000427112 APCP25054 2843 aa6.46□□□□□ -1.38
USP40-203ENST00000427112 LOC107984640A0A0U1RRK4 108 aa6.46□□□□□ -1.38
USP40-203ENST00000427112 SLC25A20O43772 301 aa6.46□□□□□ -1.38
USP40-203ENST00000427112 TCL1BO95988 128 aa6.46□□□□□ -1.38
USP40-203ENST00000427112 TRBV7-3A0A075B6L6 115 aa6.46□□□□□ -1.38
USP40-203ENST00000427112 ELANEP08246 267 aa6.46□□□□□ -1.38
USP40-203ENST00000427112 NBPF19A0A087WUL8 3843 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 A4D1N5 150 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 SMCPP49901 116 aaPredicted RBP6.45□□□□□ -1.38
USP40-203ENST00000427112 NDUFV3P56181 108 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms