RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 M0R1W7 72 aa7.4□□□□□ -1.23
PTCHD4-202ENST00000398738 IGHV3-33P01772 117 aa7.4□□□□□ -1.23
PTCHD4-202ENST00000398738 BRD3OSQ6XYD6 125 aa7.4□□□□□ -1.23
PTCHD4-202ENST00000398738 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.4□□□□□ -1.23
PTCHD4-202ENST00000398738 NDUFV3P56181 108 aaKnown RBP7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 CEMP1Q6PRD7 247 aaPredicted RBP7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 C9orf139Q6ZV77 190 aa7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 TRAV8-4A0A0B4J246 113 aa7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 VCYO14598 125 aa7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 DUX3Q96PT4 197 aa7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 TRAV8-3A0A0A6YYJ7 113 aa7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 KLK9Q9UKQ9 250 aa7.39□□□□□ -1.23
PTCHD4-202ENST00000398738 GAGE12JA6NER3 117 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 GAGE7O76087 117 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 GAGE12FP0CL80 117 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 GAGE12GP0CL81 117 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 GAGE12IP0CL82 117 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 GAGE4Q13068 117 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 LINC01620Q4KN68 170 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 C2orf82Q6UX34 121 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 DAND5Q8N907 189 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 CLEC2BQ92478 149 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 IFITM1P13164 125 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 HERV-K104P63124 156 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 PAPPA-AS1Q5QFB9 102 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 VCX2Q9H322 139 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 MDFICQ9P1T7 246 aa7.38□□□□□ -1.23
PTCHD4-202ENST00000398738 TRBV7-1A0A0A6YYK4 115 aa7.37□□□□□ -1.23
PTCHD4-202ENST00000398738 TRAV41A0A0B4J266 112 aa7.37□□□□□ -1.23
PTCHD4-202ENST00000398738 RHPN1-AS1Q9BWJ2 59 aa7.37□□□□□ -1.23
PTCHD4-202ENST00000398738 TRIAP1O43715 76 aa7.37□□□□□ -1.23
PTCHD4-202ENST00000398738 MINOS1Q5TGZ0 78 aa7.37□□□□□ -1.23
PTCHD4-202ENST00000398738 NCOR2Q9Y618 2525 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 RHODO00212 210 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 OVOL1O14753 267 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 POLR2KP53803 58 aaKnown RBP7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 LINC00315P59091 139 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 ATXN8Q156A1 80 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 ZNF876PQ49A33 203 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 TMEM263Q8WUH6 116 aaKnown RBP7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 ITLN2Q8WWU7 325 aaPredicted RBP7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 CITED1Q99966 193 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 VPS13CQ709C8 3753 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 P0DMU3 169 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 FAM231AP0DMU4 169 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 FAM231CP0DMU5 169 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 AMELXQ99217 191 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 MINOS1-NBL1R4GNA1 71 aa7.36□□□□□ -1.23
PTCHD4-202ENST00000398738 CENPVL3A0A0U1RRI6 287 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 PPP1R17O96001 155 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 UBE2E1P51965 193 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 MRPL53Q96EL3 112 aaKnown RBP7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 CHCHD5Q9BSY4 110 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 KNCNA6PVL3 124 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 H3BMM0 161 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 PRM2P04554 102 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 EBI3Q14213 229 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 UBE2WQ96B02 151 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 SBSPONQ8IVN8 264 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 ZNF625Q96I27 306 aaPredicted RBP7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 TMEM141Q96I45 108 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 CRYBG3Q68DQ2 2970 aa7.35□□□□□ -1.23
PTCHD4-202ENST00000398738 ZNF22P17026 224 aaPredicted RBP7.34□□□□□ -1.23
PTCHD4-202ENST00000398738 MEIG1Q5JSS6 88 aa7.34□□□□□ -1.23
PTCHD4-202ENST00000398738 KIF25-AS1Q9Y6Z4 181 aa7.34□□□□□ -1.23
PTCHD4-202ENST00000398738 PRRC2AP48634 2157 aaKnown RBP7.34□□□□□ -1.23
PTCHD4-202ENST00000398738 IGHV1-69DA0A0B4J2H0 117 aa7.34□□□□□ -1.23
PTCHD4-202ENST00000398738 ODF3Q96PU9 254 aa7.34□□□□□ -1.23
PTCHD4-202ENST00000398738 TRBV7-9A0A0J9YWB2 115 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 A0A0J9YXY3 114 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 SPINK13Q1W4C9 94 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 BPESC1Q9GZL8 116 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 CSMD2Q7Z408 3487 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 CHD8Q9HCK8 2581 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 TMEM223A0PJW6 202 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 CD28P10747 220 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 PROK1P58294 105 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 ADAMTSL4-AS1Q5T5F5 129 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 C5orf56Q8N8D9 126 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 TIMM17AQ99595 171 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 SIRPDQ9H106 197 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 LENEPQ9Y5L5 61 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 USP9YO00507 2555 aaPredicted RBP7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 OOSP1A8MZH6 123 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 NPFFO15130 113 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 LEPROTO15243 131 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 IGHV3-30-3P0DP02 117 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 BLCAPP62952 87 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 TIMM21Q9BVV7 248 aa7.33□□□□□ -1.24
PTCHD4-202ENST00000398738 DUX5Q96PT3 197 aa7.32□□□□□ -1.24
PTCHD4-202ENST00000398738 HIVEP3Q5T1R4 2406 aa7.32□□□□□ -1.24
PTCHD4-202ENST00000398738 RPL32P62910 135 aaKnown RBP7.32□□□□□ -1.24
PTCHD4-202ENST00000398738 Q9UF83 564 aa7.32□□□□□ -1.24
PTCHD4-202ENST00000398738 CACNA1AO00555 2505 aa7.32□□□□□ -1.24
PTCHD4-202ENST00000398738 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.31□□□□□ -1.24
PTCHD4-202ENST00000398738 TRBV10-2A0A0K0K1G8 114 aa7.31□□□□□ -1.24
PTCHD4-202ENST00000398738 A0A1W2PPR1 153 aa7.31□□□□□ -1.24
PTCHD4-202ENST00000398738 M0R2P5 195 aa7.31□□□□□ -1.24
PTCHD4-202ENST00000398738 IGHV4OR15-8A0A075B7B6 117 aa7.31□□□□□ -1.24
PTCHD4-202ENST00000398738 A0A087WW49 117 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms