RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CCDC179H3BU77 68 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 CREBL2O60519 120 aaPredicted RBP2.76□□□□□ -1.97
NUP88-213ENST00000576862 IGHV3-11P01762 117 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 TFF1P04155 84 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 SPINK8P0C7L1 97 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 PYYP10082 97 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 SUPT4H1P63272 117 aaKnown RBP2.76□□□□□ -1.97
NUP88-213ENST00000576862 CATR1Q13166 79 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 MPV17LQ2QL34 196 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 SPRNQ5BIV9 151 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 SLC35E3Q7Z769 313 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 ATOH7Q8N100 152 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 OR5C1Q8NGR4 320 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 OR2T35Q8NGX2 323 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 COPS9Q8WXC6 57 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 MUCL1Q96DR8 90 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 FXYD6Q9H0Q3 95 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 NAA60Q9H7X0 242 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 SND1-IT1Q9HBX3 110 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 NBASA2RRP1 2371 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 TET2Q6N021 2002 aaPredicted RBP2.76□□□□□ -1.97
NUP88-213ENST00000576862 POLEQ07864 2286 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 KIAA1549Q9HCM3 1950 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 DSPP15924 2871 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 EPG5Q9HCE0 2579 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 ANKHD1Q8IWZ3 2542 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 ASPMQ8IZT6 3477 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 IGLV1-50A0A075B6I6 118 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 TRAV14DV4A0A0A6YYC5 116 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 FAM236AA0A1B0GUQ0 79 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 FAM236BA0A1B0GV22 79 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 MCRIP1C9JLW8 97 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 SFT2D2O95562 160 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 IGKV1-5P01602 117 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 PRM2P04554 102 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 CTSDP07339 412 aaPredicted RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 FABP2P12104 132 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 IFITM1P13164 125 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 HLA-DRB4P13762 266 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 NFYAP23511 347 aaPredicted RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 S100A4P26447 101 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 TAS2R45P59539 299 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 YPEL3P61236 119 aaPredicted RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 UBA52P62987 128 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 EIF5AP63241 154 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 ATP5G2Q06055 141 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 BSPH1Q075Z2 132 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 DIAPH2-AS1Q14236 149 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 HES1Q14469 280 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 KRTAP13-2Q52LG2 175 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 LINC01545Q5VT33 79 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 EIF5AL1Q6IS14 154 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 TEN1Q86WV5 123 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 Q8IYB0 196 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 KCNRGQ8N5I3 272 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 DCANP1Q8TF63 244 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 BRK1Q8WUW1 75 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 CIB3Q96Q77 187 aaPredicted RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 YPEL2Q96QA6 119 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 NAA38Q9BRA0 125 aaKnown RBP2.75□□□□□ -1.97
NUP88-213ENST00000576862 HLA-DRB4X5D2U9 266 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 DMXL2Q8TDJ6 3036 aa2.75□□□□□ -1.97
NUP88-213ENST00000576862 DNAJC13O75165 2243 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 PTPRBP23467 1997 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 EML6Q6ZMW3 1958 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 ZZEF1O43149 2961 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 IGLV2-18A0A075B6J9 118 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 IGKV1D-17A0A075B6S4 117 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 TRAV12-2A0A075B6T6 113 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 TRBV6-7A0A0A0MS04 114 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 IGHV3-72A0A0B4J1Y9 119 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 UQCRQO14949 82 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 ZNF737O75373 536 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 IGHV1-46P01743 117 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 OR5AC1P0C628 307 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 CRYBB3P26998 211 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 SRP14P37108 136 aaKnown RBP2.74□□□□□ -1.97
NUP88-213ENST00000576862 FXYD4P59646 89 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 HBBP68871 147 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 LGALSLQ3ZCW2 172 aaPredicted RBP2.74□□□□□ -1.97
NUP88-213ENST00000576862 TMEM155Q4W5P6 130 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 CEMP1Q6PRD7 247 aaPredicted RBP2.74□□□□□ -1.97
NUP88-213ENST00000576862 PDPNQ86YL7 162 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 ORMDL3Q8N138 153 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 LINC00311Q8N616 119 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 ZNF645Q8N7E2 425 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 OR4A5Q8NH83 315 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 HYLS1Q96M11 299 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 SEC11CQ9BY50 192 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 LOC400499M0QZD8 3231 aa2.74□□□□□ -1.97
NUP88-213ENST00000576862 USP24Q9UPU5 2620 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 NCOA6Q14686 2063 aaPredicted RBP2.73□□□□□ -1.97
NUP88-213ENST00000576862 CFAP47Q6ZTR5 3102 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 SVILO95425 2214 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 ZFHX4Q86UP3 3567 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 FREM1Q5H8C1 2179 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 FXYD6-FXYD2A0A087WZ82 144 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 A0A0D9SG52 128 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 TMEM30CPA0ZSE6 113 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 ODAMA1E959 279 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms