RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PIK3CD-AS1Q5SR53 167 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 UFSP1Q6NVU6 142 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 KRTAP26-1Q6PEX3 210 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 OR2G3Q8NGZ4 309 aa11.21□□□□□ -0.61
CLK3-227ENST00000570296 hCG_2014768A0A024R1R8 64 aa11.2□□□□□ -0.62
CLK3-227ENST00000570296 UBE2L5PA0A1B0GUS4 154 aa11.2□□□□□ -0.62
CLK3-227ENST00000570296 IGSF23A1L1A6 192 aa11.2□□□□□ -0.62
CLK3-227ENST00000570296 ATP6V1FQ16864 119 aa11.2□□□□□ -0.62
CLK3-227ENST00000570296 TREM1Q9NP99 234 aa11.2□□□□□ -0.62
CLK3-227ENST00000570296 AP5S1Q9NUS5 200 aa11.2□□□□□ -0.62
CLK3-227ENST00000570296 RPL12P30050 165 aaKnown RBP11.19□□□□□ -0.62
CLK3-227ENST00000570296 MPV17L2Q567V2 206 aa11.19□□□□□ -0.62
CLK3-227ENST00000570296 RNASE3P12724 160 aaKnown RBP11.18□□□□□ -0.62
CLK3-227ENST00000570296 INO80EQ8NBZ0 244 aaPredicted RBP11.18□□□□□ -0.62
CLK3-227ENST00000570296 TVP23CQ96ET8 276 aa11.18□□□□□ -0.62
CLK3-227ENST00000570296 PRR34Q9NV39 138 aa11.18□□□□□ -0.62
CLK3-227ENST00000570296 C11orf21Q9P2W6 132 aa11.18□□□□□ -0.62
CLK3-227ENST00000570296 FXYD6-FXYD2A0A087WZ82 144 aa11.17□□□□□ -0.62
CLK3-227ENST00000570296 SLPIP03973 132 aa11.17□□□□□ -0.62
CLK3-227ENST00000570296 FGF7P21781 194 aa11.17□□□□□ -0.62
CLK3-227ENST00000570296 NHLH2Q02577 135 aa11.17□□□□□ -0.62
CLK3-227ENST00000570296 LGALSLQ3ZCW2 172 aaPredicted RBP11.17□□□□□ -0.62
CLK3-227ENST00000570296 TRAV26-2A0A0B4J265 109 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 RHODO00212 210 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 PKIAP61925 76 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 MAJINQ3KP22 176 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 ZNF664Q8N3J9 261 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 OR5C1Q8NGR4 320 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 LYPD6BQ8NI32 183 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 PSORS1C2Q9UIG4 136 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 HSPB11Q9Y547 144 aa11.16□□□□□ -0.62
CLK3-227ENST00000570296 TRBV6-8A0A0A6YYG3 113 aa11.15□□□□□ -0.62
CLK3-227ENST00000570296 LCE2DQ5TA82 110 aaPredicted RBP11.15□□□□□ -0.62
CLK3-227ENST00000570296 TMEM75Q8N9X5 138 aa11.15□□□□□ -0.62
CLK3-227ENST00000570296 NPCDR1Q9BY65 106 aa11.15□□□□□ -0.62
CLK3-227ENST00000570296 OR7C2O60412 319 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 UBE2L3P68036 154 aaKnown RBP11.14□□□□□ -0.63
CLK3-227ENST00000570296 Q5BKY6 102 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 Q6ZRP5 223 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 AKAP14Q86UN6 197 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 STPG4Q8N801 248 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 CMTM2Q8TAZ6 248 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 HYLS1Q96M11 299 aa11.14□□□□□ -0.63
CLK3-227ENST00000570296 A0A087WWL8 130 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 MUC21A0A0G2JKD1 596 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 UBE2D3P61077 147 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 UBE2D2P62837 147 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 COX6A2Q02221 97 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 GOLT1AQ6ZVE7 132 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 SCGB1C1Q8TD33 95 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 AQP10Q96PS8 301 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 SMIM3Q9BZL3 60 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 JPT2Q9H910 190 aa11.13□□□□□ -0.63
CLK3-227ENST00000570296 TRBV10-1A0A0K0K1A3 114 aa11.12□□□□□ -0.63
CLK3-227ENST00000570296 SMLR1H3BR10 107 aa11.12□□□□□ -0.63
CLK3-227ENST00000570296 RPL36AP83881 106 aaKnown RBP11.12□□□□□ -0.63
CLK3-227ENST00000570296 PRR4Q16378 134 aa11.12□□□□□ -0.63
CLK3-227ENST00000570296 ARL6IP6Q8N6S5 226 aa11.12□□□□□ -0.63
CLK3-227ENST00000570296 RPL36ALQ969Q0 106 aaKnown RBP11.12□□□□□ -0.63
CLK3-227ENST00000570296 OTORQ9NRC9 128 aa11.12□□□□□ -0.63
CLK3-227ENST00000570296 TNFSF18Q9UNG2 199 aa11.12□□□□□ -0.63
CLK3-227ENST00000570296 IGKV2-24A0A0C4DH68 120 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 C17orf112F2Z3M2 114 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 ARPC5O15511 151 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 NDUFS6O75380 124 aaKnown RBP11.11□□□□□ -0.63
CLK3-227ENST00000570296 ZNF80P51504 273 aaPredicted RBP11.11□□□□□ -0.63
CLK3-227ENST00000570296 CLPSL2Q6UWE3 100 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 TCTE3Q8IZS6 198 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 NDFIP1Q9BT67 221 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 KCNIP2Q9NS61 270 aa11.11□□□□□ -0.63
CLK3-227ENST00000570296 TRBV7-3A0A075B6L6 115 aa11.1□□□□□ -0.63
CLK3-227ENST00000570296 A0A1B0GVG6 124 aa11.1□□□□□ -0.63
CLK3-227ENST00000570296 FAM74A1Q5RGS3 127 aa11.1□□□□□ -0.63
CLK3-227ENST00000570296 LINC00269Q8N2A0 174 aa11.1□□□□□ -0.63
CLK3-227ENST00000570296 CHCHD5Q9BSY4 110 aa11.1□□□□□ -0.63
CLK3-227ENST00000570296 IGLV10-54A0A075B6I4 117 aa11.09□□□□□ -0.63
CLK3-227ENST00000570296 IFNA7P01567 189 aa11.09□□□□□ -0.63
CLK3-227ENST00000570296 CACNG7P62955 275 aa11.09□□□□□ -0.63
CLK3-227ENST00000570296 WDR61Q9GZS3 305 aaKnown RBP11.09□□□□□ -0.63
CLK3-227ENST00000570296 BORCS7-ASMTA0A0B4J1R7 106 aa11.08□□□□□ -0.64
CLK3-227ENST00000570296 HMSDA8MTL9 139 aa11.08□□□□□ -0.64
CLK3-227ENST00000570296 G3V3Q6 166 aa11.08□□□□□ -0.64
CLK3-227ENST00000570296 GCGP01275 180 aa11.08□□□□□ -0.64
CLK3-227ENST00000570296 S100A4P26447 101 aaKnown RBP11.08□□□□□ -0.64
CLK3-227ENST00000570296 FAM74A4Q5TZK3 123 aa11.08□□□□□ -0.64
CLK3-227ENST00000570296 PRSS3P2Q8NHM4 247 aa11.08□□□□□ -0.64
CLK3-227ENST00000570296 ZNF345Q14585 488 aa11.07□□□□□ -0.64
CLK3-227ENST00000570296 RBX1P62877 108 aa11.06□□□□□ -0.64
CLK3-227ENST00000570296 OR11H4Q8NGC9 324 aa11.06□□□□□ -0.64
CLK3-227ENST00000570296 OR10G8Q8NGN5 311 aa11.06□□□□□ -0.64
CLK3-227ENST00000570296 WFDC1Q9HC57 220 aa11.06□□□□□ -0.64
CLK3-227ENST00000570296 TRAV8-4A0A0B4J246 113 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 KANTRA0A1W2PQU2 76 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 P01737 135 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 GZMBP10144 247 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 RPS10P46783 165 aaKnown RBP11.05□□□□□ -0.64
CLK3-227ENST00000570296 KHDC3LQ587J8 217 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 IL36BQ9NZH7 164 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 LINC00474Q9P2X8 69 aa11.05□□□□□ -0.64
CLK3-227ENST00000570296 PFDN1O60925 122 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 181.4 ms