RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ATP6V1G1O75348 118 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 OR10J4P0C629 311 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 MT1HL1P0DM35 61 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 HNRNPA3P51991 378 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 UBE2L3P68036 154 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 SRSF3P84103 164 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 CFAP126Q5VTH2 177 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 DAZ4Q86SG3 579 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 SUN5Q8TC36 379 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 FXYD5Q96DB9 178 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 SMDT1Q9H4I9 107 aa7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 DAZ3Q9NR90 486 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-209ENST00000539982 PAGE4O60829 102 aa7.57□□□□□ -1.2
CLSTN3-209ENST00000539982 TYMSP04818 313 aa7.57□□□□□ -1.2
CLSTN3-209ENST00000539982 RANP62826 216 aaKnown RBP7.57□□□□□ -1.2
CLSTN3-209ENST00000539982 ZNF876PQ49A33 203 aa7.57□□□□□ -1.2
CLSTN3-209ENST00000539982 RMI2Q96E14 147 aa7.57□□□□□ -1.2
CLSTN3-209ENST00000539982 ARL2-SNX15V9GYD0 113 aa7.57□□□□□ -1.2
CLSTN3-209ENST00000539982 TRAV8-1A0A0A6YYK1 113 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 IGHV3-73A0A0B4J1V6 119 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 TRAV21A0A0B4J279 112 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 FAM74A7A6NL05 159 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 DIRC3C9JPN6 131 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 UBE2G2P60604 165 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 CST9LP1Q5W188 147 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 KCNS1Q96KK3 526 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 SDF2L1Q9HCN8 221 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 PKHD1L1Q86WI1 4243 aa7.56□□□□□ -1.2
CLSTN3-209ENST00000539982 A0A1W2PRE2 83 aa7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 TMEM218A2RU14 115 aa7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 KRBOX1C9JBD0 128 aa7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 C9JQL5 133 aa7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 NDUFS6O75380 124 aaKnown RBP7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 MGST1P10620 155 aaKnown RBP7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 S100A1P23297 94 aa7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 MEF2BQ02080 365 aaPredicted RBP7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 LRP2P98164 4655 aa7.55□□□□□ -1.2
CLSTN3-209ENST00000539982 IGKV2D-24A0A075B6R9 120 aa7.54□□□□□ -1.2
CLSTN3-209ENST00000539982 PDE6DO43924 150 aa7.54□□□□□ -1.2
CLSTN3-209ENST00000539982 SRP19P09132 144 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-209ENST00000539982 NKX6-2Q9C056 277 aaPredicted RBP7.54□□□□□ -1.2
CLSTN3-209ENST00000539982 A0A087WWC5 75 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 F6UZH7 168 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 Q6ZRU5 148 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 CYB561D1Q8N8Q1 229 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 PTH2Q96A98 100 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 DNAJC30Q96LL9 226 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 OTORQ9NRC9 128 aa7.53□□□□□ -1.2
CLSTN3-209ENST00000539982 GAGE12JA6NER3 117 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 F8W036 122 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 TMEM250H0YL14 139 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 LINC00694P0DN24 101 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 GAGE1Q13065 139 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 GAGE4Q13068 117 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 GAGE5Q13069 117 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 GAGE13Q4V321 117 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 TVP23CQ96ET8 276 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 TCEAL7Q9BRU2 100 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 SEC11CQ9BY50 192 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 URGCP-MRPS24S4R325 110 aa7.52□□□□□ -1.21
CLSTN3-209ENST00000539982 PGPA6NDG6 321 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 PGPEP1LA6NFU8 196 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 ADCYAP1P18509 176 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 CEBPGP53567 150 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 SUMO1P63165 101 aaKnown RBP7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 C14orf177Q52M58 125 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 NIT1Q86X76 327 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 CMTM2Q8TAZ6 248 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 C11orf52Q96A22 123 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 C9orf85Q96MD7 179 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 KLK12Q9UKR0 248 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 RPH3ALQ9UNE2 315 aa7.51□□□□□ -1.21
CLSTN3-209ENST00000539982 SCO2A0A1W2PP80 73 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 C10orf91Q5T1B1 145 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 ATRAIDQ6UW56 229 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 ZFP2Q6ZN57 461 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 GOLT1AQ6ZVE7 132 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 ARL6IP6Q8N6S5 226 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 UBE2WQ96B02 151 aa7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 CARHSP1Q9Y2V2 147 aaKnown RBP7.5□□□□□ -1.21
CLSTN3-209ENST00000539982 ELOBQ15370 118 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 FAM74A3Q4VXF1 159 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 C5orf17Q8NAS9 161 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 HIST1H2BAQ96A08 127 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 PARLQ9H300 379 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 C11orf21Q9P2W6 132 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 Q9UF83 564 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 EPDR1Q9UM22 224 aa7.49□□□□□ -1.21
CLSTN3-209ENST00000539982 ZNF727A8MUV8 499 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 PEX7O00628 323 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 APOC3P02656 99 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 ASIPP42127 132 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 AKR1C3P42330 323 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 Q0VG73 95 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 ZNF674Q2M3X9 581 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 LINC00479Q96M42 142 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 SMIM7Q9BQ49 75 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 CHCHD7Q9BUK0 85 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 SAMD10Q9BYL1 202 aa7.48□□□□□ -1.21
CLSTN3-209ENST00000539982 A0A087WX48 190 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 253.8 ms