RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	NABP2	Q9BQ15	211 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	OVOL2	Q9BRP0	275 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	COL5A1	P20908	1838 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-231	ENST00000531110	LTBP2	Q14767	1821 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110		A0A0G2JRQ6	117 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110		A0A0J9YWU9	116 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	C19orf84	I3L1E1	186 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	CCL4	P13236	92 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	GUSBP11	Q6P575	273 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	UNQ9165/PRO28630	Q6UXU0	137 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	C16orf47	Q6ZP98	133 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-231	ENST00000531110	C6orf223	Q8N319	242 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	PGLYRP4	Q96LB8	373 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	CNFN	Q9BYD5	112 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110		Q9H3A6	140 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	C11orf68	Q9H3H3	251 aa	Known RBP	4.04	□□□□□ -1.76
CD44-231	ENST00000531110	MYO7A	Q13402	2215 aa		4.04	□□□□□ -1.76
CD44-231	ENST00000531110	EML6	Q6ZMW3	1958 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	SNRNP200	O75643	2136 aa	Known RBP	4.03	□□□□□ -1.76
CD44-231	ENST00000531110	IGKV1D-42	A0A075B6H8	117 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	IGKV1-9	A0A0C4DH69	117 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	KRTAP16-1	A8MUX0	517 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	ZNF73	O43830	326 aa	Predicted RBP	4.03	□□□□□ -1.76
CD44-231	ENST00000531110	PPP1R17	O96001	155 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	IGKV1-39	P01597	117 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	IGKV1D-39	P04432	117 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	PIRT	P0C851	137 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	IAPP	P10997	89 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	FAM216B	Q8N7L0	139 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	SMCR5	Q8TEV8	140 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	DIRC1	Q969H9	104 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	SHANK1	Q9Y566	2161 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	FREM3	P0C091	2139 aa		4.03	□□□□□ -1.76
CD44-231	ENST00000531110	BPTF	Q12830	3046 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	CEP192	Q8TEP8	1941 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	IGHV1OR21-1	A0A087WYE8	117 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110		A0A0J9YXY3	114 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	ZNF815P	A8K554	130 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	EDDM3B	P56851	147 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	RBM3	P98179	157 aa	Known RBP	4.02	□□□□□ -1.77
CD44-231	ENST00000531110	LCE1F	Q5T754	118 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110		Q8IYB0	196 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	DYNAP	Q8N1N2	210 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	PRSS33	Q8NF86	280 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	FXYD5	Q96DB9	178 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	SMAD5-AS1	Q9Y6J3	95 aa		4.02	□□□□□ -1.77
CD44-231	ENST00000531110	ADAMTS9	Q9P2N4	1935 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	COL4A6	Q14031	1691 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	TRAV40	A0A0B4J280	105 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	IGHV3OR16-9	A0A0B4J2B5	98 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	IGHV1-69D	A0A0B4J2H0	117 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	ZNF80	P51504	273 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-231	ENST00000531110	BLCAP	P62952	87 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110		Q6ZRP5	223 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	C7orf65	Q6ZTY9	151 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	CCL17	Q92583	94 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	OBSCN-AS1	Q96MR7	158 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	CCL13	Q99616	98 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	CYP4F30P	Q9H0H9	118 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	CCL28	Q9NRJ3	127 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	MPDZ	O75970	2070 aa		4.01	□□□□□ -1.77
CD44-231	ENST00000531110	IGHV3OR16-10	A0A075B7F0	116 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	TMEM30CP	A0ZSE6	113 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	C11orf86	A6NJI1	115 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	TMEM256-PLSCR3	K7ERE1	68 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	CD28	P10747	220 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	ZNF138	P52744	262 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	SCGB3A1	Q96QR1	104 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	DEPP	Q9NTK1	212 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	ICOS	Q9Y6W8	199 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	GOLGA4	Q13439	2230 aa	Known RBP	4	□□□□□ -1.77
CD44-231	ENST00000531110	C2orf16	Q68DN1	1984 aa		4	□□□□□ -1.77
CD44-231	ENST00000531110	IGLV2-18	A0A075B6J9	118 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	FAM223B	A6NKX1	122 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	KLLN	B2CW77	178 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110		D6R8Y8	96 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	MIF	P14174	115 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	SPINT3	P49223	89 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	UBE2A	P49459	152 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	CLEC19A	Q6UXS0	136 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	FAM223A	Q8IWN6	122 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	C20orf197	Q8N268	126 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	LYPD1	Q8N2G4	141 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	NKAPP1	Q8N9T2	125 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	FAM167A-AS1	Q96KT0	104 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	TIMM17A	Q99595	171 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	SPRR3	Q9UBC9	169 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	HEATR5B	Q9P2D3	2071 aa		3.99	□□□□□ -1.77
CD44-231	ENST00000531110	TET1	Q8NFU7	2136 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	TNRC6B	Q9UPQ9	1833 aa	Known RBP	3.98	□□□□□ -1.77
CD44-231	ENST00000531110	IGKV1D-13	A0A0B4J2D9	117 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	IGHV5-51	A0A0C4DH38	117 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110		A0A1B0GW54	56 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110		A8MUN3	132 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	FSTL3	O95633	263 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	IGKV1-13	P0DP09	117 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	PDE6H	Q13956	83 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	SS18	Q15532	418 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-231	ENST00000531110	ZNF491	Q8N8L2	437 aa		3.98	□□□□□ -1.77

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