RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 THOC2Q8NI27 1593 aaKnown RBP0.42□□□□□ -2.34
CD44-215ENST00000525241 TSTD3H0UI37 97 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 M0QZK8 103 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 PFDN1O60925 122 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 TRACP01848 142 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 SCTP09683 121 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 SLC25A4P12235 298 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 S100GP29377 79 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 SRP9P49458 86 aaKnown RBP0.42□□□□□ -2.34
CD44-215ENST00000525241 NDUFA6P56556 154 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 LINC00299Q6ZSB3 139 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 AKAP14Q86UN6 197 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 RREB1Q92766 1687 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 MAPKBP1O60336 1514 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 EFCAB6Q5THR3 1501 aa0.42□□□□□ -2.34
CD44-215ENST00000525241 PHLPP1O60346 1717 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 F5P12259 2224 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 A0A1B0GW64 132 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 HBDP02042 147 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 SLC25A5P05141 298 aaKnown RBP0.41□□□□□ -2.34
CD44-215ENST00000525241 TPT1P13693 172 aaKnown RBP0.41□□□□□ -2.34
CD44-215ENST00000525241 ASB16-AS1Q495Z4 193 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 CCSMST1Q4G0I0 132 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 SPATA45Q537H7 98 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 CSAG1Q6PB30 78 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 CASC2Q6XLA1 102 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 CROCCP2Q86T23 111 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 BRK1Q8WUW1 75 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 SKA2Q8WVK7 121 aaPredicted RBP0.41□□□□□ -2.34
CD44-215ENST00000525241 CIB3Q96Q77 187 aaPredicted RBP0.41□□□□□ -2.34
CD44-215ENST00000525241 WFDC10AQ9H1F0 79 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 HSPB11Q9Y547 144 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 DNAH1Q9P2D7 4330 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 LRP2P98164 4655 aa0.41□□□□□ -2.34
CD44-215ENST00000525241 NWD1Q149M9 1564 aa0.4□□□□□ -2.34
CD44-215ENST00000525241 LAMB1P07942 1786 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 DYNC2H1Q8NCM8 4307 aaKnown RBP0.4□□□□□ -2.35
CD44-215ENST00000525241 NBDYA0A0U1RRE5 68 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 LOC105371267A0A1B0GV96 52 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 A0A1W2PPM0 123 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 ZNF727A8MUV8 499 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 UQCRQO14949 82 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 DEGS1O15121 323 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 TNFSF15O95150 251 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 TCRAP04437 139 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 SDC4P31431 198 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 RPL37AP61513 92 aaKnown RBP0.4□□□□□ -2.35
CD44-215ENST00000525241 BLCAPP62952 87 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 QRFPP83859 136 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 OCIAD2Q56VL3 154 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 LELP1Q5T871 98 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 SPATA8Q6RVD6 105 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 TMEM35BQ8NCS4 154 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 OR5AK2Q8NH90 309 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 PRO3102Q9H379 93 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 C19orf12Q9NSK7 152 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 CSMD3Q7Z407 3707 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 PKD1P98161 4303 aa0.4□□□□□ -2.35
CD44-215ENST00000525241 BLMP54132 1417 aaPredicted RBP0.39□□□□□ -2.35
CD44-215ENST00000525241 ZMYM4Q5VZL5 1548 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 TMEM131LA2VDJ0 1609 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 STARD9Q9P2P6 4700 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 ALMS1Q8TCU4 4167 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 C3orf85A0A1B0GTC6 90 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 LOC107986453A0A1B0GWG9 222 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 SCGB1A1P11684 91 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 FXYD4P59646 89 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 MORN2Q502X0 79 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 OTOSQ8NHW6 89 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 ADGRB1O14514 1584 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 COL4A6Q14031 1691 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 LOC285556D6RIA3 1793 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 MUC22E2RYF6 1773 aaPredicted RBP0.39□□□□□ -2.35
CD44-215ENST00000525241 TANC1Q9C0D5 1861 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 SACSQ9NZJ4 4579 aa0.39□□□□□ -2.35
CD44-215ENST00000525241 ANK2Q01484 3957 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 ASXL3Q9C0F0 2248 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 HSPG2P98160 4391 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 MYOM1P52179 1685 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 A0A096LPI6 279 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.38□□□□□ -2.35
CD44-215ENST00000525241 A0A0D9SG42 100 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 NUPR2A6NF83 97 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 ARL5CA6NH57 179 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 C9JAW5 83 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 IGF2P01344 180 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 CD3DP04234 171 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 ALX1Q15699 326 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 NEDD8Q15843 81 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 TMEM91Q6ZNR0 172 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 OR8I2Q8N0Y5 310 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 ATOH7Q8N100 152 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 C10orf111Q8N326 155 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 TCTEX1D1Q8N7M0 179 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 C10orf95Q9H7T3 257 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 HIGD1AQ9Y241 93 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 DNAJC15Q9Y5T4 150 aa0.38□□□□□ -2.35
CD44-215ENST00000525241 NRKQ7Z2Y5 1582 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 TRAV23DV6A0A075B6W5 121 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 IFITM5A6NNB3 132 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms