RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 C2orf66Q6UXQ4 117 aa10.29□□□□□ -0.76
CCDC88A-211ENST00000471947 Q6YL49 198 aa10.29□□□□□ -0.76
CCDC88A-211ENST00000471947 RAX2Q96IS3 184 aa10.29□□□□□ -0.76
CCDC88A-211ENST00000471947 CD5LO43866 347 aa10.29□□□□□ -0.76
CCDC88A-211ENST00000471947 PPBPP02775 128 aa10.29□□□□□ -0.76
CCDC88A-211ENST00000471947 TRGV1A0A0A0MS02 117 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 SDHAF1A6NFY7 115 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 H3BUT2 72 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 IGLV1-40P01703 118 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 SRSF9Q13242 221 aaKnown RBP eCLIP10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 CEMP1Q6PRD7 247 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 Q6ZSV7 163 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 GATD1Q8NB37 220 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 TP53TG1Q9Y2A0 90 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 DUSP14O95147 198 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 K7ERJ3 54 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 IGKCP01834 107 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 NPC2P61916 151 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 DGAT2L7PQ6IED9 249 aa10.28□□□□□ -0.76
CCDC88A-211ENST00000471947 A0A096LNJ9 63 aa10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 NHP2Q9NX24 153 aaKnown RBP10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 IGHV1OR15-1A0A075B7D0 117 aa10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 ADARB2-AS1A8MUL3 147 aa10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 AMMECR1LQ6DCA0 310 aa10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 HIST1H4GQ99525 98 aa10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 SMIM2Q9BVW6 85 aa10.27□□□□□ -0.77
CCDC88A-211ENST00000471947 COL6A5A8TX70 2615 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 IGKV2D-26A0A0A0MRZ7 120 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 ELANEP08246 267 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 TMEM97Q5BJF2 176 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 SYT8Q8NBV8 401 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 CYSLTR1Q9Y271 337 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 J3QLI3 93 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 OR9G4Q8NGQ1 327 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 DCANP1Q8TF63 244 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 PEMTQ9UBM1 199 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 U3KQE9 123 aa10.26□□□□□ -0.77
CCDC88A-211ENST00000471947 PRSS29PA6NIE9 313 aa10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 DPM2O94777 84 aa10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 RNASE3P12724 160 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 ZNF418Q8TF45 676 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 CCL24O00175 119 aa10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 SUMO4Q6EEV6 95 aa10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 CHTOPQ9Y3Y2 248 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-211ENST00000471947 A0A0J9YX75 114 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 RBAKDNA6NC62 111 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 PLA2G2AP14555 144 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 Q8N8P6 123 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 RASL10AQ92737 203 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 ESM1Q9NQ30 184 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 APOMO95445 188 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 TNFRSF18Q9Y5U5 241 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 OR11H12B2RN74 326 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 DEFB4AO15263 64 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 PRSS2P07478 247 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 OR11H2Q8NH07 326 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 Q9UF83 564 aa10.24□□□□□ -0.77
CCDC88A-211ENST00000471947 ZNF493Q6ZR52 646 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 TRGV2A0A075B6R0 118 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 A0A096LPF7 62 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 DEFB130BP0DP73 79 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 DEFB130AP0DP74 79 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 ATP5LO75964 103 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 HTN3P15516 51 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 C12orf54Q6X4T0 127 aa10.23□□□□□ -0.77
CCDC88A-211ENST00000471947 LINC01545Q5VT33 79 aa10.22□□□□□ -0.77
CCDC88A-211ENST00000471947 TRBV6-1A0A0K0K1D8 114 aa10.22□□□□□ -0.77
CCDC88A-211ENST00000471947 H3BUA1 57 aa10.22□□□□□ -0.77
CCDC88A-211ENST00000471947 K7EQG2 157 aa10.22□□□□□ -0.77
CCDC88A-211ENST00000471947 DLEU1O43261 78 aa10.22□□□□□ -0.77
CCDC88A-211ENST00000471947 ADAMTSL5Q6ZMM2 481 aa10.22□□□□□ -0.77
CCDC88A-211ENST00000471947 ZNF625Q96I27 306 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-211ENST00000471947 HIVEP1P15822 2718 aa10.21□□□□□ -0.77
CCDC88A-211ENST00000471947 INAFM1C9JVW0 142 aa10.21□□□□□ -0.78
CCDC88A-211ENST00000471947 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 IGKV2-29A2NJV5 120 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 RPL24P83731 157 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 SPXQ9BT56 116 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE12BA1L429 117 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 SOCS3O14543 225 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE7O76087 117 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE12FP0CL80 117 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE12GP0CL81 117 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE12IP0CL82 117 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 LBHQ53QV2 105 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 BVES-AS1Q5T3Y7 98 aa10.2□□□□□ -0.78
CCDC88A-211ENST00000471947 LOC107984156A0A0G2JMH3 177 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 ZNF815PA8K554 130 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 ARL17AQ8IVW1 177 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE10A6NGK3 116 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 RRN3P1Q2M238 152 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 COX8AP10176 69 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 ODF1Q14990 250 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 C19orf54Q5BKX5 351 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 NRACQ8N912 160 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 SCRT2Q9NQ03 307 aa10.19□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE12JA6NER3 117 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 AZU1P20160 251 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE1Q13065 139 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE4Q13068 117 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms