RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 Q6ZSA8 131 aa13.9□□□□□ -0.18
COL9A3-207ENST00000467819 HIST1H2BAQ96A08 127 aa13.9□□□□□ -0.18
COL9A3-207ENST00000467819 LINC01620Q4KN68 170 aa13.89□□□□□ -0.19
COL9A3-207ENST00000467819 DNLZQ5SXM8 178 aa13.89□□□□□ -0.19
COL9A3-207ENST00000467819 AKR1C8PQ5T2L2 129 aa13.89□□□□□ -0.19
COL9A3-207ENST00000467819 DNAJC30Q96LL9 226 aa13.89□□□□□ -0.19
COL9A3-207ENST00000467819 NKX6-2Q9C056 277 aaPredicted RBP13.89□□□□□ -0.19
COL9A3-207ENST00000467819 TMSB15BA0A087X1C1 80 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 J3QL48 77 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 M0R381 172 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 FAM162BQ5T6X4 162 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 NIT1Q86X76 327 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 LINC00528Q8N1L1 170 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 RMI2Q96E14 147 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 PHLDA3Q9Y5J5 127 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 COX11Q9Y6N1 276 aa13.88□□□□□ -0.19
COL9A3-207ENST00000467819 IGKV2D-24A0A075B6R9 120 aa13.87□□□□□ -0.19
COL9A3-207ENST00000467819 PLA2G1BP04054 148 aaKnown RBP13.87□□□□□ -0.19
COL9A3-207ENST00000467819 TPT1P13693 172 aaKnown RBP13.87□□□□□ -0.19
COL9A3-207ENST00000467819 UBE2G1P62253 170 aa13.87□□□□□ -0.19
COL9A3-207ENST00000467819 FMC1Q96HJ9 113 aa13.87□□□□□ -0.19
COL9A3-207ENST00000467819 KLK12Q9UKR0 248 aa13.87□□□□□ -0.19
COL9A3-207ENST00000467819 ZFP30Q9Y2G7 519 aa13.87□□□□□ -0.19
COL9A3-207ENST00000467819 MAP1LC3B2A6NCE7 125 aa13.86□□□□□ -0.19
COL9A3-207ENST00000467819 SFRP2Q96HF1 295 aa13.86□□□□□ -0.19
COL9A3-207ENST00000467819 MAP1LC3BQ9GZQ8 125 aa13.86□□□□□ -0.19
COL9A3-207ENST00000467819 RBFOX3A6NFN3 312 aa13.85□□□□□ -0.19
COL9A3-207ENST00000467819 COX8CQ7Z4L0 72 aa13.85□□□□□ -0.19
COL9A3-207ENST00000467819 UBE2WQ96B02 151 aa13.85□□□□□ -0.19
COL9A3-207ENST00000467819 A0A087WX48 190 aa13.84□□□□□ -0.19
COL9A3-207ENST00000467819 SEC11BP0C7V7 166 aa13.84□□□□□ -0.19
COL9A3-207ENST00000467819 ZNF674Q2M3X9 581 aa13.84□□□□□ -0.19
COL9A3-207ENST00000467819 LINC01559Q495D7 138 aa13.84□□□□□ -0.19
COL9A3-207ENST00000467819 CST9LP1Q5W188 147 aa13.83□□□□□ -0.2
COL9A3-207ENST00000467819 ZFP82Q8N141 532 aa13.83□□□□□ -0.2
COL9A3-207ENST00000467819 Q8N976 141 aa13.83□□□□□ -0.2
COL9A3-207ENST00000467819 RPL36AP83881 106 aaKnown RBP13.82□□□□□ -0.2
COL9A3-207ENST00000467819 KCNIP4Q6PIL6 250 aa13.82□□□□□ -0.2
COL9A3-207ENST00000467819 SCXQ7RTU7 201 aa13.82□□□□□ -0.2
COL9A3-207ENST00000467819 RPL36ALQ969Q0 106 aaKnown RBP13.82□□□□□ -0.2
COL9A3-207ENST00000467819 BATF3Q9NR55 127 aa13.82□□□□□ -0.2
COL9A3-207ENST00000467819 LTAP01374 205 aa13.81□□□□□ -0.2
COL9A3-207ENST00000467819 AKR1C3P42330 323 aa13.81□□□□□ -0.2
COL9A3-207ENST00000467819 TRBV10-1A0A0K0K1A3 114 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 TRBV6-1A0A0K0K1D8 114 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 G3V3Q6 166 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 UBE2D3P61077 147 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 UBE2D2P62837 147 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 ELOBQ15370 118 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 STOML3Q8TAV4 291 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 CHCHD7Q9BUK0 85 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 CYTL1Q9NRR1 136 aa13.8□□□□□ -0.2
COL9A3-207ENST00000467819 TRBV7-3A0A075B6L6 115 aa13.79□□□□□ -0.2
COL9A3-207ENST00000467819 ARPC5O15511 151 aa13.79□□□□□ -0.2
COL9A3-207ENST00000467819 FHITP49789 147 aa13.79□□□□□ -0.2
COL9A3-207ENST00000467819 TCEAL7Q9BRU2 100 aa13.79□□□□□ -0.2
COL9A3-207ENST00000467819 TMEM262E9PQX1 116 aa13.78□□□□□ -0.2
COL9A3-207ENST00000467819 ZNF56Q15929 161 aa13.78□□□□□ -0.2
COL9A3-207ENST00000467819 DEFB104AQ8WTQ1 72 aa13.78□□□□□ -0.2
COL9A3-207ENST00000467819 PAGE4O60829 102 aa13.77□□□□□ -0.21
COL9A3-207ENST00000467819 RPL19P84098 196 aaKnown RBP13.77□□□□□ -0.21
COL9A3-207ENST00000467819 CHAC1Q9BUX1 264 aa13.77□□□□□ -0.21
COL9A3-207ENST00000467819 KRTAP29-1A8MX34 341 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-207ENST00000467819 Q0VG73 95 aa13.76□□□□□ -0.21
COL9A3-207ENST00000467819 ATRAIDQ6UW56 229 aa13.76□□□□□ -0.21
COL9A3-207ENST00000467819 OR10AG1Q8NH19 301 aa13.76□□□□□ -0.21
COL9A3-207ENST00000467819 TRBV6-8A0A0A6YYG3 113 aa13.75□□□□□ -0.21
COL9A3-207ENST00000467819 A0A1B0GV50 99 aa13.75□□□□□ -0.21
COL9A3-207ENST00000467819 RAB4BP61018 213 aa13.75□□□□□ -0.21
COL9A3-207ENST00000467819 NEXN-AS1Q8NBZ9 246 aa13.75□□□□□ -0.21
COL9A3-207ENST00000467819 OR10G8Q8NGN5 311 aa13.75□□□□□ -0.21
COL9A3-207ENST00000467819 C1orf43Q9BWL3 253 aa13.75□□□□□ -0.21
COL9A3-207ENST00000467819 LRP1Q07954 4544 aaKnown RBP13.74□□□□□ -0.21
COL9A3-207ENST00000467819 CRPP02741 224 aa13.74□□□□□ -0.21
COL9A3-207ENST00000467819 MPV17L2Q567V2 206 aa13.74□□□□□ -0.21
COL9A3-207ENST00000467819 C15orf54Q8N8G6 183 aa13.74□□□□□ -0.21
COL9A3-207ENST00000467819 CIRBP-AS1Q8TBR5 109 aa13.74□□□□□ -0.21
COL9A3-207ENST00000467819 MUC21A0A0G2JKD1 596 aa13.73□□□□□ -0.21
COL9A3-207ENST00000467819 MUC21A0A140T8X8 626 aa13.73□□□□□ -0.21
COL9A3-207ENST00000467819 SCO2A0A1W2PP80 73 aa13.73□□□□□ -0.21
COL9A3-207ENST00000467819 SMLR1H3BR10 107 aa13.73□□□□□ -0.21
COL9A3-207ENST00000467819 ENHOQ6UWT2 76 aa13.73□□□□□ -0.21
COL9A3-207ENST00000467819 ZNF471Q9BX82 626 aaPredicted RBP13.73□□□□□ -0.21
COL9A3-207ENST00000467819 ANGP03950 147 aaKnown RBP13.72□□□□□ -0.21
COL9A3-207ENST00000467819 C14orf177Q52M58 125 aa13.72□□□□□ -0.21
COL9A3-207ENST00000467819 FAM213BQ8TBF2 198 aa13.72□□□□□ -0.21
COL9A3-207ENST00000467819 SFT2D1Q8WV19 159 aa13.72□□□□□ -0.21
COL9A3-207ENST00000467819 CXCL1P09341 107 aa13.71□□□□□ -0.21
COL9A3-207ENST00000467819 SSTP61278 116 aa13.71□□□□□ -0.21
COL9A3-207ENST00000467819 PRR27Q6MZM9 219 aa13.71□□□□□ -0.21
COL9A3-207ENST00000467819 CHCHD5Q9BSY4 110 aa13.71□□□□□ -0.21
COL9A3-207ENST00000467819 PFDN1O60925 122 aa13.7□□□□□ -0.22
COL9A3-207ENST00000467819 HLA-DQA1P01909 254 aa13.7□□□□□ -0.22
COL9A3-207ENST00000467819 S100A9P06702 114 aaKnown RBP13.7□□□□□ -0.22
COL9A3-207ENST00000467819 SPANXN1Q5VSR9 72 aa13.7□□□□□ -0.22
COL9A3-207ENST00000467819 BAGE2Q86Y30 109 aa13.7□□□□□ -0.22
COL9A3-207ENST00000467819 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-207ENST00000467819 F5H697 171 aa13.69□□□□□ -0.22
COL9A3-207ENST00000467819 SNAI2O43623 268 aa13.69□□□□□ -0.22
COL9A3-207ENST00000467819 KRTAP10-4P60372 401 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 305.6 ms