RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ELOBQ15370 118 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 LINC01556Q5JQF7 62 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 UFSP1Q6NVU6 142 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 NHLRC2Q8NBF2 726 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 RPL36ALQ969Q0 106 aaKnown RBP4.38□□□□□ -1.71
USP54-202ENST00000413442 DNAH6Q9C0G6 4158 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 VPS13DQ5THJ4 4388 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 TRBV7-3A0A075B6L6 115 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 C19orf71A6NCJ1 209 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 FAM231BA6NCW3 169 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 RBFOX3A6NFN3 312 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 H7C1H1 209 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 P01737 135 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 CRYGDP07320 174 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 FAM74A3Q4VXF1 159 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 SPANXN1Q5VSR9 72 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 CDPF1Q6NVV7 123 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 TEX261Q6UWH6 196 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 ZNF575Q86XF7 245 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 OR10G8Q8NGN5 311 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 DNAJC30Q96LL9 226 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 TM2D2Q9BX73 214 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 MSRB1Q9NZV6 116 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 KMT2AQ03164 3969 aa4.37□□□□□ -1.71
USP54-202ENST00000413442 TRAV8-3A0A0A6YYJ7 113 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 GRIFINA4D1Z8 144 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 A8MWL6 223 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 IBA57-AS1B1ANH7 110 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 H3BVH4 76 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 M0R036 132 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 TRGC1P0CF51 173 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 CENPWQ5EE01 88 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 OR10J3Q5JRS4 329 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 PRR27Q6MZM9 219 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 FAM231DQ6ZW35 169 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 DAZ4Q86SG3 579 aaKnown RBP4.36□□□□□ -1.71
USP54-202ENST00000413442 DAZ3Q9NR90 486 aaKnown RBP4.36□□□□□ -1.71
USP54-202ENST00000413442 URGCP-MRPS24S4R325 110 aa4.36□□□□□ -1.71
USP54-202ENST00000413442 A0A1B0GV50 99 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 M0R381 172 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 IGLV2-8P01709 118 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 IGLC6P0CF74 106 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 FOXA3P55318 350 aaPredicted RBP4.35□□□□□ -1.71
USP54-202ENST00000413442 ERVFC1-1P60608 527 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 CT83Q5H943 113 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 KCNIP4Q6PIL6 250 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 SMIM15Q7Z3B0 74 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 FER1L6-AS1Q8NA97 138 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 OR2D3Q8NGH3 330 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 RMI2Q96E14 147 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 AP1S3Q96PC3 154 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 CNFNQ9BYD5 112 aa4.35□□□□□ -1.71
USP54-202ENST00000413442 EIF5A2Q9GZV4 153 aaKnown RBP4.35□□□□□ -1.71
USP54-202ENST00000413442 RAB19A4D1S5 217 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 CDK2AP2O75956 126 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 LINC00694P0DN24 101 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 LINC00315P59091 139 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 Q0VG73 95 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 FAM74A4Q5TZK3 123 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 ALKAL2Q6UX46 152 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 Q6ZRN7 208 aaPredicted RBP4.34□□□□□ -1.71
USP54-202ENST00000413442 NUDT10Q8NFP7 164 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 OCC1Q8TAD7 63 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 NUDT11Q96G61 164 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 GFRA4Q9GZZ7 299 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 DPH3P1Q9H4G8 78 aa4.34□□□□□ -1.71
USP54-202ENST00000413442 hCG_2014768A0A024R1R8 64 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 TMSB15BA0A087X1C1 80 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 IGHV3-73A0A0B4J1V6 119 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 GAGE12JA6NER3 117 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 F5H697 171 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 NTF3P20783 257 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 UBE2D3P61077 147 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 UBE2D2P62837 147 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 TNP2Q05952 138 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 GAGE1Q13065 139 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 GAGE4Q13068 117 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 GAGE5Q13069 117 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 PEA15Q15121 130 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 GAGE13Q4V321 117 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 WFDC10BQ8IUB3 73 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 OR10AG1Q8NH19 301 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 NTN5Q8WTR8 489 aaPredicted RBP4.33□□□□□ -1.72
USP54-202ENST00000413442 BORCS7Q96B45 105 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 DERL1Q9BUN8 251 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 SAMD10Q9BYL1 202 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 RPP21Q9H633 154 aaKnown RBP4.33□□□□□ -1.72
USP54-202ENST00000413442 NIT2Q9NQR4 276 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 TNFRSF18Q9Y5U5 241 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 KIF25-AS1Q9Y6Z4 181 aa4.33□□□□□ -1.72
USP54-202ENST00000413442 TRBV20OR9-2A0A075B6H5 130 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 A0A087WWL8 130 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 A0A087WX48 190 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 TRBV6-8A0A0A6YYG3 113 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 LOC100131303A0A0U1RQF7 123 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 ZNF727A8MUV8 499 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 PSCAO43653 123 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 GATCO43716 136 aaKnown RBP4.32□□□□□ -1.72
USP54-202ENST00000413442 PPP1R17O96001 155 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 CTRLP40313 264 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms