RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 TEX22C9J3V5 150 aa14.42□□□□□ -0.1
SMARCC1-201ENST00000254480 ATP5G1P05496 136 aa14.42□□□□□ -0.1
SMARCC1-201ENST00000254480 ZFP2Q6ZN57 461 aa14.41□□□□□ -0.1
SMARCC1-201ENST00000254480 F8W1H4 67 aa14.41□□□□□ -0.1
SMARCC1-201ENST00000254480 SRSF2Q01130 221 aaKnown RBP14.41□□□□□ -0.1
SMARCC1-201ENST00000254480 UTF1Q5T230 341 aa14.41□□□□□ -0.1
SMARCC1-201ENST00000254480 BAALC-AS2P0C853 105 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 ODF3L1Q8IXM7 274 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 GTSF1Q8WW33 167 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 PTPN13Q12923 2485 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 NCR3O14931 201 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 CUL9Q8IWT3 2517 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 CFC1BP0CG36 223 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 CFC1P0CG37 223 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 TDRG1Q3Y452 100 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 CCL18P55774 89 aa14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 MRPL23Q16540 153 aaKnown RBP14.4□□□□□ -0.1
SMARCC1-201ENST00000254480 FRMD6-AS1P0C7T7 363 aa14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 PLXNB3Q9ULL4 1909 aa14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 TECTAO75443 2155 aa14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 Q8NA96 180 aa14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 RNF138Q8WVD3 245 aa14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 HHLA3Q9XRX5 114 aa14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 SONP18583 2426 aaKnown RBP14.39□□□□□ -0.11
SMARCC1-201ENST00000254480 ETDCA0A1B0GVM5 59 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 IGLV2-14P01704 120 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 LINC01548A6NM66 108 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 COX7A2LO14548 114 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 ANKRD39Q53RE8 183 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 MUSTN1Q8IVN3 82 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 FAM167A-AS1Q96KT0 104 aa14.38□□□□□ -0.11
SMARCC1-201ENST00000254480 C19orf84I3L1E1 186 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 TIRAPP58753 221 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 ZNF503Q96F45 646 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 MDFICQ9P1T7 246 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 LENEPQ9Y5L5 61 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 ACACBO00763 2458 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 TRACP01848 142 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 COX7B2Q8TF08 81 aa14.37□□□□□ -0.11
SMARCC1-201ENST00000254480 COL4A3Q01955 1670 aa14.36□□□□□ -0.11
SMARCC1-201ENST00000254480 DSCAML1Q8TD84 2053 aa14.36□□□□□ -0.11
SMARCC1-201ENST00000254480 LYPD6BQ8NI32 183 aa14.36□□□□□ -0.11
SMARCC1-201ENST00000254480 SND1-IT1Q9HBX3 110 aa14.36□□□□□ -0.11
SMARCC1-201ENST00000254480 WI2-2373I1.2A0A1W2PRP0 233 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 SH2D6Q7Z4S9 175 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 C2orf16Q68DN1 1984 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 IGLV1-47P01700 117 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 DEFB125Q8N687 156 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 OPRPNQ99935 248 aaPredicted RBP14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 SPANXA1Q9NS26 97 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 ORMDL1Q9P0S3 153 aa14.35□□□□□ -0.11
SMARCC1-201ENST00000254480 TMEM61Q8N0U2 210 aa14.34□□□□□ -0.11
SMARCC1-201ENST00000254480 KLK12Q9UKR0 248 aa14.34□□□□□ -0.11
SMARCC1-201ENST00000254480 CEMP1Q6PRD7 247 aaPredicted RBP14.34□□□□□ -0.11
SMARCC1-201ENST00000254480 IFITM1P13164 125 aa14.34□□□□□ -0.11
SMARCC1-201ENST00000254480 ANKRD29Q8N6D5 301 aa14.34□□□□□ -0.11
SMARCC1-201ENST00000254480 GAGE12HA6NDE8 117 aa14.33□□□□□ -0.11
SMARCC1-201ENST00000254480 IGF2-ASQ6U949 168 aa14.33□□□□□ -0.11
SMARCC1-201ENST00000254480 SIRPDQ9H106 197 aa14.33□□□□□ -0.12
SMARCC1-201ENST00000254480 IGLL5B9A064 214 aa14.33□□□□□ -0.12
SMARCC1-201ENST00000254480 A4D1N5 150 aa14.33□□□□□ -0.12
SMARCC1-201ENST00000254480 VSIG2Q96IQ7 327 aa14.33□□□□□ -0.12
SMARCC1-201ENST00000254480 SPRY4Q9C004 299 aa14.33□□□□□ -0.12
SMARCC1-201ENST00000254480 DENND4AQ7Z401 1863 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 DAZ2Q13117 558 aaKnown RBP14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 DAZ4Q86SG3 579 aaKnown RBP14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 DAZ3Q9NR90 486 aaKnown RBP14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 P0DMU3 169 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 FAM231AP0DMU4 169 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 FAM231CP0DMU5 169 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 HIVEP2P31629 2446 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 DNAJC9-AS1A6NH13 148 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 C22orf34Q6ZV56 151 aa14.32□□□□□ -0.12
SMARCC1-201ENST00000254480 TRBV7-3A0A075B6L6 115 aa14.31□□□□□ -0.12
SMARCC1-201ENST00000254480 DAZAP2Q15038 168 aaPredicted RBP14.3□□□□□ -0.12
SMARCC1-201ENST00000254480 TP53TG3Q9ULZ0 132 aa14.3□□□□□ -0.12
SMARCC1-201ENST00000254480 SIVA1O15304 175 aa14.3□□□□□ -0.12
SMARCC1-201ENST00000254480 LYPD6Q86Y78 171 aa14.3□□□□□ -0.12
SMARCC1-201ENST00000254480 BAALCQ8WXS3 180 aa14.3□□□□□ -0.12
SMARCC1-201ENST00000254480 PRR14LQ5THK1 2151 aa14.3□□□□□ -0.12
SMARCC1-201ENST00000254480 HERV-K104P63124 156 aa14.29□□□□□ -0.12
SMARCC1-201ENST00000254480 C4orf3Q8WVX3 66 aa14.29□□□□□ -0.12
SMARCC1-201ENST00000254480 IGHG2P01859 326 aa14.29□□□□□ -0.12
SMARCC1-201ENST00000254480 C9orf47Q6ZRZ4 202 aa14.29□□□□□ -0.12
SMARCC1-201ENST00000254480 FANCD2OSQ96PS1 177 aa14.28□□□□□ -0.12
SMARCC1-201ENST00000254480 NCOA6Q14686 2063 aaPredicted RBP14.28□□□□□ -0.12
SMARCC1-201ENST00000254480 IGKV3D-7A0A0C4DH55 119 aa14.28□□□□□ -0.12
SMARCC1-201ENST00000254480 Q6ZSR3 168 aa14.28□□□□□ -0.12
SMARCC1-201ENST00000254480 CLPSL1A2RUU4 121 aa14.27□□□□□ -0.13
SMARCC1-201ENST00000254480 SMAD5-AS1Q9Y6J3 95 aa14.27□□□□□ -0.13
SMARCC1-201ENST00000254480 TEX48A0A1B0GUV7 120 aa14.27□□□□□ -0.13
SMARCC1-201ENST00000254480 PRSS47A8MTI9 375 aa14.27□□□□□ -0.13
SMARCC1-201ENST00000254480 GPHB5Q86YW7 130 aa14.26□□□□□ -0.13
SMARCC1-201ENST00000254480 FXYD2P54710 66 aa14.26□□□□□ -0.13
SMARCC1-201ENST00000254480 RNF152Q8N8N0 203 aa14.26□□□□□ -0.13
SMARCC1-201ENST00000254480 UBE2AP49459 152 aa14.25□□□□□ -0.13
SMARCC1-201ENST00000254480 HIGD2BQ4VC39 106 aa14.25□□□□□ -0.13
SMARCC1-201ENST00000254480 A6NDX4 124 aa14.25□□□□□ -0.13
SMARCC1-201ENST00000254480 MYCNOSP40205 109 aa14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 CLEC2BQ92478 149 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms