RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CDC34P49427 236 aaPredicted RBP10.75□□□□□ -0.69
CLN3-246ENST00000636228 SUMO1P63165 101 aaKnown RBP10.75□□□□□ -0.69
CLN3-246ENST00000636228 ATP6V0E2Q8NHE4 81 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 RAB24Q969Q5 203 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 TMEM70Q9BUB7 260 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 DMBT1Q9UGM3 2413 aaPredicted RBP10.75□□□□□ -0.69
CLN3-246ENST00000636228 SRRM2Q9UQ35 2752 aaKnown RBP10.74□□□□□ -0.69
CLN3-246ENST00000636228 RNASE3P12724 160 aaKnown RBP10.74□□□□□ -0.69
CLN3-246ENST00000636228 GCHFRP30047 84 aa10.74□□□□□ -0.69
CLN3-246ENST00000636228 C5orf17Q8NAS9 161 aa10.74□□□□□ -0.69
CLN3-246ENST00000636228 GTSF1LQ9H1H1 148 aa10.74□□□□□ -0.69
CLN3-246ENST00000636228 Q9UF83 564 aa10.74□□□□□ -0.69
CLN3-246ENST00000636228 GAGE12JA6NER3 117 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 GGTLC3B5MD39 225 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 G3V3Q6 166 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 LECT2O14960 151 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 FLI1Q01543 452 aaPredicted RBP10.73□□□□□ -0.69
CLN3-246ENST00000636228 GAGE1Q13065 139 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 GAGE4Q13068 117 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 GAGE5Q13069 117 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 GAGE13Q4V321 117 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 SMUG1Q53HV7 270 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 Q5BKY6 102 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 LINC00479Q96M42 142 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 EPDR1Q9UM22 224 aa10.73□□□□□ -0.69
CLN3-246ENST00000636228 SERTM2A0A1B0GWG4 89 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 K7EQM0 130 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 CIDEAO60543 219 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 MGST1P10620 155 aaKnown RBP10.72□□□□□ -0.69
CLN3-246ENST00000636228 ATP6V0CP27449 155 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 OR2T35Q8NGX2 323 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 SUN5Q8TC36 379 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 JPT2Q9H910 190 aa10.72□□□□□ -0.69
CLN3-246ENST00000636228 FLG2Q5D862 2391 aaPredicted RBP10.72□□□□□ -0.69
CLN3-246ENST00000636228 TRAV34A0A0B4J273 112 aa10.71□□□□□ -0.69
CLN3-246ENST00000636228 IGKV3D-20A0A0C4DH25 116 aa10.71□□□□□ -0.69
CLN3-246ENST00000636228 ZFP69Q49AA0 526 aa10.71□□□□□ -0.69
CLN3-246ENST00000636228 DAZ4Q86SG3 579 aaKnown RBP10.71□□□□□ -0.69
CLN3-246ENST00000636228 OR2G3Q8NGZ4 309 aa10.71□□□□□ -0.69
CLN3-246ENST00000636228 SH3BGRL3Q9H299 93 aa10.71□□□□□ -0.69
CLN3-246ENST00000636228 PARLQ9H300 379 aa10.71□□□□□ -0.69
CLN3-246ENST00000636228 DAZ3Q9NR90 486 aaKnown RBP10.71□□□□□ -0.69
CLN3-246ENST00000636228 LGALSLQ3ZCW2 172 aaPredicted RBP10.7□□□□□ -0.7
CLN3-246ENST00000636228 PTH2Q96A98 100 aa10.7□□□□□ -0.7
CLN3-246ENST00000636228 SAMD10Q9BYL1 202 aa10.7□□□□□ -0.7
CLN3-246ENST00000636228 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.69□□□□□ -0.7
CLN3-246ENST00000636228 S100A4P26447 101 aaKnown RBP10.69□□□□□ -0.7
CLN3-246ENST00000636228 LAGE3Q14657 143 aa10.69□□□□□ -0.7
CLN3-246ENST00000636228 LINC01620Q4KN68 170 aa10.69□□□□□ -0.7
CLN3-246ENST00000636228 TCTE3Q8IZS6 198 aa10.69□□□□□ -0.7
CLN3-246ENST00000636228 C14orf178Q8N769 122 aaPredicted RBP10.69□□□□□ -0.7
CLN3-246ENST00000636228 CYB561D1Q8N8Q1 229 aa10.69□□□□□ -0.7
CLN3-246ENST00000636228 TM2D2Q9BX73 214 aa10.69□□□□□ -0.7
CLN3-246ENST00000636228 SMLR1H3BR10 107 aa10.68□□□□□ -0.7
CLN3-246ENST00000636228 CXorf1O96002 111 aa10.68□□□□□ -0.7
CLN3-246ENST00000636228 AKAP14Q86UN6 197 aa10.68□□□□□ -0.7
CLN3-246ENST00000636228 BAALCQ8WXS3 180 aa10.68□□□□□ -0.7
CLN3-246ENST00000636228 DNAJC30Q96LL9 226 aa10.68□□□□□ -0.7
CLN3-246ENST00000636228 PSMG3Q9BT73 122 aaPredicted RBP10.68□□□□□ -0.7
CLN3-246ENST00000636228 ACTR3CQ9C0K3 210 aaPredicted RBP10.68□□□□□ -0.7
CLN3-246ENST00000636228 BOLA1Q9Y3E2 137 aa10.68□□□□□ -0.7
CLN3-246ENST00000636228 J3QL48 77 aa10.67□□□□□ -0.7
CLN3-246ENST00000636228 LINC00694P0DN24 101 aa10.67□□□□□ -0.7
CLN3-246ENST00000636228 SAPCD1Q5SSQ6 148 aa10.67□□□□□ -0.7
CLN3-246ENST00000636228 TMEM167BQ9NRX6 74 aa10.67□□□□□ -0.7
CLN3-246ENST00000636228 ARL2-SNX15V9GYD0 113 aa10.67□□□□□ -0.7
CLN3-246ENST00000636228 FXYD6-FXYD2A0A087WZ82 144 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 A8MWV9 139 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 IFNA7P01567 189 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 MBP02144 154 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 ASIPP42127 132 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 UBE2G2P60604 165 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 SERF2P84101 59 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 DMRTA1Q5VZB9 504 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 UFSP1Q6NVU6 142 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 ZFP2Q6ZN57 461 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 AQP10Q96PS8 301 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 TNFSF18Q9UNG2 199 aa10.66□□□□□ -0.7
CLN3-246ENST00000636228 TRAV8-3A0A0A6YYJ7 113 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 GRIFINA4D1Z8 144 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 RNF222A6NCQ9 220 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 FABP5P3A8MUU1 101 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 C1QBP02746 253 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 CRIP1P50238 77 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 ZNF726P1Q15940 193 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 Q6ZSA8 131 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 LINC00528Q8N1L1 170 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 OR11H4Q8NGC9 324 aa10.65□□□□□ -0.7
CLN3-246ENST00000636228 A0A1W2PRE2 83 aa10.64□□□□□ -0.71
CLN3-246ENST00000636228 HMSDA8MTL9 139 aa10.64□□□□□ -0.71
CLN3-246ENST00000636228 B4DEV8 164 aa10.64□□□□□ -0.71
CLN3-246ENST00000636228 H3BVH4 76 aa10.64□□□□□ -0.71
CLN3-246ENST00000636228 M0R036 132 aa10.64□□□□□ -0.71
CLN3-246ENST00000636228 RPL7L1Q6DKI1 246 aaKnown RBP10.64□□□□□ -0.71
CLN3-246ENST00000636228 PEX7O00628 323 aa10.63□□□□□ -0.71
CLN3-246ENST00000636228 ARMS2P0C7Q2 107 aa10.63□□□□□ -0.71
CLN3-246ENST00000636228 FGF8P55075 233 aaPredicted RBP10.63□□□□□ -0.71
CLN3-246ENST00000636228 FAM74A4Q5TZK3 123 aa10.63□□□□□ -0.71
CLN3-246ENST00000636228 INO80EQ8NBZ0 244 aaPredicted RBP10.63□□□□□ -0.71
CLN3-246ENST00000636228 IL36BQ9NZH7 164 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms