RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 HMSDA8MTL9 139 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 K7EP13 123 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 EVI2AP22794 236 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 TIRAPP58753 221 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 ZNF345Q14585 488 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 PRADC1Q9BSG0 188 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 ZFP30Q9Y2G7 519 aa10.23□□□□□ -0.77
LIG1-215ENST00000597901 A0A0D9SG52 128 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 SEC11BP0C7V7 166 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 DNAH10OSP0CZ25 163 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 S100A4P26447 101 aaKnown RBP10.22□□□□□ -0.77
LIG1-215ENST00000597901 CST9LP1Q5W188 147 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 COX8CQ7Z4L0 72 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 Q86TA4 180 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 NFE4Q86UQ8 179 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 MBD3L1Q8WWY6 194 aa10.22□□□□□ -0.77
LIG1-215ENST00000597901 RYR1P21817 5038 aa10.21□□□□□ -0.77
LIG1-215ENST00000597901 KRBOX1C9JBD0 128 aa10.21□□□□□ -0.77
LIG1-215ENST00000597901 ASIPP42127 132 aa10.21□□□□□ -0.77
LIG1-215ENST00000597901 Q6ZSN1 163 aa10.21□□□□□ -0.77
LIG1-215ENST00000597901 SFT2D1Q8WV19 159 aa10.21□□□□□ -0.77
LIG1-215ENST00000597901 ZC2HC1AQ96GY0 325 aa10.21□□□□□ -0.77
LIG1-215ENST00000597901 LRP1BQ9NZR2 4599 aa10.21□□□□□ -0.78
LIG1-215ENST00000597901 TRBV6-1A0A0K0K1D8 114 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 B4DEV8 164 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 UMAD1C9J7I0 102 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 PAGE4O60829 102 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 MGST1P10620 155 aaKnown RBP10.2□□□□□ -0.78
LIG1-215ENST00000597901 RHOHQ15669 191 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 LGALSLQ3ZCW2 172 aaPredicted RBP10.2□□□□□ -0.78
LIG1-215ENST00000597901 PIK3CD-AS1Q5SR53 167 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 DNLZQ5SXM8 178 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 MAPKAPK5-AS1Q8N8E1 139 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 FMC1Q96HJ9 113 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 ZNF471Q9BX82 626 aaPredicted RBP10.2□□□□□ -0.78
LIG1-215ENST00000597901 PGPEP1Q9NXJ5 209 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 IL36BQ9NZH7 164 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 MSRB1Q9NZV6 116 aa10.2□□□□□ -0.78
LIG1-215ENST00000597901 IGHV3-38A0A0C4DH36 116 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 GRIFINA4D1Z8 144 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 A8MWV9 139 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 SH2D1AO60880 128 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 CRYGDP07320 174 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 ARMS2P0C7Q2 107 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 UBE2G1P62253 170 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 DMRTA1Q5VZB9 504 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 ZFP2Q6ZN57 461 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 FAM213BQ8TBF2 198 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 TCEAL7Q9BRU2 100 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 PARLQ9H300 379 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 JPT2Q9H910 190 aa10.19□□□□□ -0.78
LIG1-215ENST00000597901 KANTRA0A1W2PQU2 76 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 M0R036 132 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 EREGO14944 169 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 BCL2L11O43521 198 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 LTAP01374 205 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 ZNF674Q2M3X9 581 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 FAM162BQ5T6X4 162 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 ATP6V0E2Q8NHE4 81 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 KRTAP4-5Q9BYR2 181 aa10.18□□□□□ -0.78
LIG1-215ENST00000597901 TRAV8-6A0A0B4J262 113 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 A0A1B0GV50 99 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 ERVFC1-1P60608 527 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 OR10J3Q5JRS4 329 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 TMUB2Q71RG4 321 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 C10orf126Q8N4M7 172 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 SAMD10Q9BYL1 202 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 GTSF1LQ9H1H1 148 aa10.17□□□□□ -0.78
LIG1-215ENST00000597901 A0A087WTM6 91 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 H3BVH4 76 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 H2AFB1P0C5Y9 115 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 AKR1C3P42330 323 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 EIF5AP63241 154 aaKnown RBP10.16□□□□□ -0.78
LIG1-215ENST00000597901 LINC01556Q5JQF7 62 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 LELP1Q5T871 98 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 UFSP1Q6NVU6 142 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 SYT8Q8NBV8 401 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 Q9UF83 564 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 BOLA1Q9Y3E2 137 aa10.16□□□□□ -0.78
LIG1-215ENST00000597901 TMSB15BA0A087X1C1 80 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 GAGE12JA6NER3 117 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 IBA57-AS1B1ANH7 110 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 S100A9P06702 114 aaKnown RBP10.15□□□□□ -0.78
LIG1-215ENST00000597901 FUSP35637 526 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIG1-215ENST00000597901 GAGE1Q13065 139 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 GAGE4Q13068 117 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 GAGE5Q13069 117 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 LINC01559Q495D7 138 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 GAGE13Q4V321 117 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 SCRT2Q9NQ03 307 aa10.15□□□□□ -0.78
LIG1-215ENST00000597901 HSPG2P98160 4391 aa10.14□□□□□ -0.79
LIG1-215ENST00000597901 DNAH5Q8TE73 4624 aa10.14□□□□□ -0.79
LIG1-215ENST00000597901 PFDN1O60925 122 aa10.14□□□□□ -0.79
LIG1-215ENST00000597901 C14orf178Q8N769 122 aaPredicted RBP10.14□□□□□ -0.79
LIG1-215ENST00000597901 SFRP2Q96HF1 295 aa10.14□□□□□ -0.79
LIG1-215ENST00000597901 PHLDA3Q9Y5J5 127 aa10.14□□□□□ -0.79
LIG1-215ENST00000597901 SCO2A0A1W2PP80 73 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 IGHV3-30P01768 117 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 IGHV3-33P01772 117 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 IGHV3-30-3P0DP02 117 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms