RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 IL36BQ9NZH7 164 aa10.48□□□□□ -0.73
UPF1-202ENST00000594243 RBFOX3A6NFN3 312 aa10.47□□□□□ -0.73
UPF1-202ENST00000594243 PGPEP1LA6NFU8 196 aa10.47□□□□□ -0.73
UPF1-202ENST00000594243 SFTA3P0C7M3 94 aa10.47□□□□□ -0.73
UPF1-202ENST00000594243 PIK3CD-AS1Q5SR53 167 aa10.47□□□□□ -0.73
UPF1-202ENST00000594243 SMIM12Q96EX1 92 aa10.47□□□□□ -0.73
UPF1-202ENST00000594243 GRIFINA4D1Z8 144 aa10.46□□□□□ -0.73
UPF1-202ENST00000594243 ARMS2P0C7Q2 107 aa10.46□□□□□ -0.73
UPF1-202ENST00000594243 GNG4P50150 75 aa10.46□□□□□ -0.73
UPF1-202ENST00000594243 CENPWQ5EE01 88 aa10.46□□□□□ -0.73
UPF1-202ENST00000594243 ZNF506Q5JVG8 444 aa10.46□□□□□ -0.73
UPF1-202ENST00000594243 PRR27Q6MZM9 219 aa10.46□□□□□ -0.73
UPF1-202ENST00000594243 TMSB15BA0A087X1C1 80 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 A0A096LPF7 62 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 RAB19A4D1S5 217 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 RS1O15537 224 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 CFAP126Q5VTH2 177 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 SYT8Q8NBV8 401 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 DAZAP1Q96EP5 407 aaKnown RBP10.45□□□□□ -0.74
UPF1-202ENST00000594243 ICOSQ9Y6W8 199 aa10.45□□□□□ -0.74
UPF1-202ENST00000594243 A8MWV9 139 aa10.44□□□□□ -0.74
UPF1-202ENST00000594243 H3BVH4 76 aa10.44□□□□□ -0.74
UPF1-202ENST00000594243 MGST1P10620 155 aaKnown RBP10.44□□□□□ -0.74
UPF1-202ENST00000594243 MRPL23Q16540 153 aaKnown RBP10.44□□□□□ -0.74
UPF1-202ENST00000594243 TEX261Q6UWH6 196 aa10.44□□□□□ -0.74
UPF1-202ENST00000594243 ZNF575Q86XF7 245 aa10.44□□□□□ -0.74
UPF1-202ENST00000594243 BIN3Q9NQY0 253 aa10.44□□□□□ -0.74
UPF1-202ENST00000594243 PHLDA3Q9Y5J5 127 aa10.44□□□□□ -0.74
UPF1-202ENST00000594243 TMEM250H0YL14 139 aa10.43□□□□□ -0.74
UPF1-202ENST00000594243 IGLV2-8P01709 118 aa10.43□□□□□ -0.74
UPF1-202ENST00000594243 CXCL1P09341 107 aa10.43□□□□□ -0.74
UPF1-202ENST00000594243 PCNPQ8WW12 178 aaKnown RBP10.43□□□□□ -0.74
UPF1-202ENST00000594243 EIF5A2Q9GZV4 153 aaKnown RBP10.43□□□□□ -0.74
UPF1-202ENST00000594243 LINC00588Q9Y4M8 146 aa10.43□□□□□ -0.74
UPF1-202ENST00000594243 MED14OSP0DP75 135 aa10.42□□□□□ -0.74
UPF1-202ENST00000594243 ESRGQ1W209 222 aa10.42□□□□□ -0.74
UPF1-202ENST00000594243 DMRTA1Q5VZB9 504 aa10.42□□□□□ -0.74
UPF1-202ENST00000594243 SCRT2Q9NQ03 307 aa10.42□□□□□ -0.74
UPF1-202ENST00000594243 K7EQD1 137 aa10.41□□□□□ -0.74
UPF1-202ENST00000594243 NDUFS6O75380 124 aaKnown RBP10.41□□□□□ -0.74
UPF1-202ENST00000594243 GATA1P15976 413 aaPredicted RBP10.41□□□□□ -0.74
UPF1-202ENST00000594243 RPL19P84098 196 aaKnown RBP10.41□□□□□ -0.74
UPF1-202ENST00000594243 ZFP2Q6ZN57 461 aa10.41□□□□□ -0.74
UPF1-202ENST00000594243 NEGR1Q7Z3B1 354 aa10.41□□□□□ -0.74
UPF1-202ENST00000594243 ZFP82Q8N141 532 aa10.41□□□□□ -0.74
UPF1-202ENST00000594243 FAM210AQ96ND0 272 aa10.41□□□□□ -0.74
UPF1-202ENST00000594243 TRBV20OR9-2A0A075B6H5 130 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 IGLV2-18A0A075B6J9 118 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 IGHV3-73A0A0B4J1V6 119 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 TRBV6-4A0A1B0GX49 114 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 GYPEP15421 78 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 SRIP30626 198 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 RPS20P60866 119 aaKnown RBP10.4□□□□□ -0.74
UPF1-202ENST00000594243 TOR2AQ5JU69 321 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 ZNRF2Q8NHG8 242 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 PRADC1Q9BSG0 188 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 PARLQ9H300 379 aa10.4□□□□□ -0.74
UPF1-202ENST00000594243 XKRY2A2RUG3 117 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 C19orf71A6NCJ1 209 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 M0R2N4 97 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 M0R381 172 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 P01737 135 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 SH2D6Q7Z4S9 175 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 SLC25A29Q8N8R3 303 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 SFRP2Q96HF1 295 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 UPK3BQ9BT76 320 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 SSBP4Q9BWG4 385 aaPredicted RBP10.39□□□□□ -0.75
UPF1-202ENST00000594243 Q9H8V8 135 aa10.39□□□□□ -0.75
UPF1-202ENST00000594243 MRPS16Q9Y3D3 137 aaKnown RBP10.39□□□□□ -0.75
UPF1-202ENST00000594243 RHODO00212 210 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 SNAI2O43623 268 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 OR5AL1P0C617 328 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 CEBPGP53567 150 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 RHOHQ15669 191 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 LYPD5Q6UWN5 251 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 OR2D3Q8NGH3 330 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 OCC1Q8TAD7 63 aa10.38□□□□□ -0.75
UPF1-202ENST00000594243 JPT2Q9H910 190 aa10.37□□□□□ -0.75
UPF1-202ENST00000594243 MUC4Q99102 2169 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 SPANXN1Q5VSR9 72 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 UFSP1Q6NVU6 142 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 Q6ZR54 194 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 NUDT10Q8NFP7 164 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 NUDT11Q96G61 164 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 SAMD10Q9BYL1 202 aa10.36□□□□□ -0.75
UPF1-202ENST00000594243 LOC100131303A0A0U1RQF7 123 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 NBDYA0A0U1RRE5 68 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 CRYGDP07320 174 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 SRP19P09132 144 aaKnown RBP10.35□□□□□ -0.75
UPF1-202ENST00000594243 FAM74A4Q5TZK3 123 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 OR10AG1Q8NH19 301 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 LY96Q9Y6Y9 160 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 KMT2AQ03164 3969 aa10.35□□□□□ -0.75
UPF1-202ENST00000594243 FRAS1Q86XX4 4008 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 F2Z2F3 143 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 K7EN84 100 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 NXPH4O95158 308 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 PEA15Q15121 130 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 FER1L6-AS1Q8NA97 138 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 SMIM7Q9BQ49 75 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms