RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 C8orf31Q8N9H6 132 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 ADARB2-AS1A8MUL3 147 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 FOXI1Q12951 378 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 IGHV3OR16-12A0A075B7B8 117 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 VCYO14598 125 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 GNRH2O43555 120 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 ZNF876PQ49A33 203 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 PIEZO1Q92508 2521 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 SONP18583 2426 aaKnown RBP8.84□□□□□ -0.99
CLN3-238ENST00000569430 E9PLD3 99 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 THBDP07204 575 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 ZNF688P0C7X2 276 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 CLUHP3Q96NS8 147 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 PRO1854Q9UHT4 67 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 IGLV11-55A0A075B6I3 123 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 A0A096LNJ9 63 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 TCF15Q12870 199 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 C2orf82Q6UX34 121 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 ZFP2Q6ZN57 461 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 C9orf139Q6ZV77 190 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 FANCD2OSQ96PS1 177 aa8.84□□□□□ -0.99
CLN3-238ENST00000569430 WI2-2373I1.2A0A1W2PRP0 233 aa8.83□□□□□ -1
CLN3-238ENST00000569430 SHISA9B4DS77 424 aa8.83□□□□□ -1
CLN3-238ENST00000569430 MEIG1Q5JSS6 88 aa8.83□□□□□ -1
CLN3-238ENST00000569430 BRD3OSQ6XYD6 125 aa8.83□□□□□ -1
CLN3-238ENST00000569430 LINC00477Q96M19 166 aa8.83□□□□□ -1
CLN3-238ENST00000569430 C1QTNF4Q9BXJ3 329 aa8.83□□□□□ -1
CLN3-238ENST00000569430 TLN2Q9Y4G6 2542 aa8.83□□□□□ -1
CLN3-238ENST00000569430 TRAV41A0A0B4J266 112 aa8.83□□□□□ -1
CLN3-238ENST00000569430 OVOL1O14753 267 aa8.83□□□□□ -1
CLN3-238ENST00000569430 SLC25A20O43772 301 aa8.83□□□□□ -1
CLN3-238ENST00000569430 DUSP14O95147 198 aaKnown RBP8.83□□□□□ -1
CLN3-238ENST00000569430 SCGB1A1P11684 91 aa8.83□□□□□ -1
CLN3-238ENST00000569430 SDHAF1A6NFY7 115 aa8.83□□□□□ -1
CLN3-238ENST00000569430 CD28P10747 220 aa8.83□□□□□ -1
CLN3-238ENST00000569430 SAA4P35542 130 aa8.83□□□□□ -1
CLN3-238ENST00000569430 C10orf126Q8N4M7 172 aa8.83□□□□□ -1
CLN3-238ENST00000569430 NTN5Q8WTR8 489 aaPredicted RBP8.83□□□□□ -1
CLN3-238ENST00000569430 TNFRSF18Q9Y5U5 241 aa8.83□□□□□ -1
CLN3-238ENST00000569430 USP9YO00507 2555 aaPredicted RBP8.83□□□□□ -1
CLN3-238ENST00000569430 PMVKQ15126 192 aa8.82□□□□□ -1
CLN3-238ENST00000569430 IGKV3OR2-268A0A0C4DH90 116 aa8.82□□□□□ -1
CLN3-238ENST00000569430 TRBV6-1A0A0K0K1D8 114 aa8.82□□□□□ -1
CLN3-238ENST00000569430 MT-ATP8P03928 68 aa8.82□□□□□ -1
CLN3-238ENST00000569430 KLRB1Q12918 225 aa8.82□□□□□ -1
CLN3-238ENST00000569430 CIRBPQ14011 172 aaKnown RBP8.82□□□□□ -1
CLN3-238ENST00000569430 TM2D2Q9BX73 214 aa8.82□□□□□ -1
CLN3-238ENST00000569430 FSTL3O95633 263 aa8.81□□□□□ -1
CLN3-238ENST00000569430 IGLC6P0CF74 106 aa8.81□□□□□ -1
CLN3-238ENST00000569430 BUB3O43684 328 aa8.81□□□□□ -1
CLN3-238ENST00000569430 LGALS1P09382 135 aaKnown RBP8.81□□□□□ -1
CLN3-238ENST00000569430 SNRPD3P62318 126 aaKnown RBP8.81□□□□□ -1
CLN3-238ENST00000569430 J3QQQ9 107 aa8.81□□□□□ -1
CLN3-238ENST00000569430 GRNP28799 593 aaKnown RBP8.81□□□□□ -1
CLN3-238ENST00000569430 TRAV8-3A0A0A6YYJ7 113 aa8.8□□□□□ -1
CLN3-238ENST00000569430 RPL39P62891 51 aaKnown RBP8.8□□□□□ -1
CLN3-238ENST00000569430 PLA2G2CQ5R387 149 aa8.8□□□□□ -1
CLN3-238ENST00000569430 IGFL2Q6UWQ7 119 aa8.8□□□□□ -1
CLN3-238ENST00000569430 RNF185Q96GF1 192 aa8.8□□□□□ -1
CLN3-238ENST00000569430 ZNF48Q96MX3 618 aaPredicted RBP8.8□□□□□ -1
CLN3-238ENST00000569430 RHPN1-AS1Q9BWJ2 59 aa8.8□□□□□ -1
CLN3-238ENST00000569430 DCHS2Q6V1P9 2916 aa8.8□□□□□ -1
CLN3-238ENST00000569430 M0R1W7 72 aa8.8□□□□□ -1
CLN3-238ENST00000569430 M0R2P5 195 aa8.8□□□□□ -1
CLN3-238ENST00000569430 FAM110DQ8TAY7 271 aaPredicted RBP8.8□□□□□ -1
CLN3-238ENST00000569430 ZNF625Q96I27 306 aaPredicted RBP8.8□□□□□ -1
CLN3-238ENST00000569430 ATXN8Q156A1 80 aa8.8□□□□□ -1
CLN3-238ENST00000569430 TRBV7-1A0A0A6YYK4 115 aa8.8□□□□□ -1
CLN3-238ENST00000569430 OVOL3O00110 214 aa8.8□□□□□ -1
CLN3-238ENST00000569430 TEN1Q86WV5 123 aa8.8□□□□□ -1
CLN3-238ENST00000569430 IGHV7-81A0A0B4J1V7 117 aa8.79□□□□□ -1
CLN3-238ENST00000569430 RNASE13Q5GAN3 156 aaKnown RBP8.79□□□□□ -1
CLN3-238ENST00000569430 MINOS1Q5TGZ0 78 aa8.79□□□□□ -1
CLN3-238ENST00000569430 HHLA3Q9XRX5 114 aa8.79□□□□□ -1
CLN3-238ENST00000569430 MINOS1-NBL1R4GNA1 71 aa8.79□□□□□ -1
CLN3-238ENST00000569430 USP9XQ93008 2570 aaPredicted RBP8.79□□□□□ -1
CLN3-238ENST00000569430 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.79□□□□□ -1
CLN3-238ENST00000569430 PLEKHB2Q96CS7 222 aa8.79□□□□□ -1
CLN3-238ENST00000569430 U3KQK5 164 aa8.79□□□□□ -1
CLN3-238ENST00000569430 TRAV12-2A0A075B6T6 113 aa8.79□□□□□ -1
CLN3-238ENST00000569430 A4D1N5 150 aa8.79□□□□□ -1
CLN3-238ENST00000569430 C11orf86A6NJI1 115 aa8.78□□□□□ -1
CLN3-238ENST00000569430 KNCNA6PVL3 124 aa8.78□□□□□ -1
CLN3-238ENST00000569430 NPFFO15130 113 aa8.78□□□□□ -1
CLN3-238ENST00000569430 BAALCQ8WXS3 180 aa8.78□□□□□ -1
CLN3-238ENST00000569430 RNF183Q96D59 192 aa8.78□□□□□ -1
CLN3-238ENST00000569430 CRYGBP07316 175 aa8.78□□□□□ -1
CLN3-238ENST00000569430 ANKRD29Q8N6D5 301 aa8.78□□□□□ -1
CLN3-238ENST00000569430 OOSP1A8MZH6 123 aa8.78□□□□□ -1
CLN3-238ENST00000569430 IGF1P05019 195 aa8.78□□□□□ -1
CLN3-238ENST00000569430 IGFL3Q6UXB1 125 aa8.78□□□□□ -1
CLN3-238ENST00000569430 KLK9Q9UKQ9 250 aa8.77□□□□□ -1.01
CLN3-238ENST00000569430 Q6ZQT7 251 aa8.77□□□□□ -1.01
CLN3-238ENST00000569430 TRPT1Q86TN4 253 aaKnown RBP8.77□□□□□ -1.01
CLN3-238ENST00000569430 TIMM21Q9BVV7 248 aa8.77□□□□□ -1.01
CLN3-238ENST00000569430 GAGE5Q13069 117 aa8.77□□□□□ -1.01
CLN3-238ENST00000569430 GAGE6Q13070 117 aa8.77□□□□□ -1.01
CLN3-238ENST00000569430 JPT2Q9H910 190 aa8.77□□□□□ -1.01
CLN3-238ENST00000569430 CCDC168Q8NDH2 2452 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 CFC1BP0CG36 223 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms