RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 IGHV3-73A0A0B4J1V6 119 aa11.43□□□□□ -0.58
CLN3-216ENST00000565316 MGST1P10620 155 aaKnown RBP11.43□□□□□ -0.58
CLN3-216ENST00000565316 ATP6V0CP27449 155 aa11.43□□□□□ -0.58
CLN3-216ENST00000565316 SUMO1P63165 101 aaKnown RBP11.43□□□□□ -0.58
CLN3-216ENST00000565316 CYB561D1Q8N8Q1 229 aa11.43□□□□□ -0.58
CLN3-216ENST00000565316 TMEM70Q9BUB7 260 aa11.43□□□□□ -0.58
CLN3-216ENST00000565316 TMEM167BQ9NRX6 74 aa11.43□□□□□ -0.58
CLN3-216ENST00000565316 CXorf1O96002 111 aa11.42□□□□□ -0.58
CLN3-216ENST00000565316 SMR3BP02814 79 aaPredicted RBP11.42□□□□□ -0.58
CLN3-216ENST00000565316 SAPCD1Q5SSQ6 148 aa11.42□□□□□ -0.58
CLN3-216ENST00000565316 Q8N814 137 aa11.42□□□□□ -0.58
CLN3-216ENST00000565316 FLG2Q5D862 2391 aaPredicted RBP11.42□□□□□ -0.58
CLN3-216ENST00000565316 LAGE3Q14657 143 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 ZFP69Q49AA0 526 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 PIK3CD-AS1Q5SR53 167 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 ZFP2Q6ZN57 461 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 Q6ZSN1 163 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 PRNTQ86SH4 94 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 ATP6V0E2Q8NHE4 81 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 Q9HAA7 133 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 TNFSF18Q9UNG2 199 aa11.41□□□□□ -0.58
CLN3-216ENST00000565316 IGHV3-30P01768 117 aa11.4□□□□□ -0.58
CLN3-216ENST00000565316 IGHV3-33P01772 117 aa11.4□□□□□ -0.58
CLN3-216ENST00000565316 LINC00694P0DN24 101 aa11.4□□□□□ -0.58
CLN3-216ENST00000565316 IGHV3-30-3P0DP02 117 aa11.4□□□□□ -0.58
CLN3-216ENST00000565316 IGHV3-30-5P0DP03 117 aa11.4□□□□□ -0.58
CLN3-216ENST00000565316 ACTR3CQ9C0K3 210 aaPredicted RBP11.4□□□□□ -0.58
CLN3-216ENST00000565316 SH3BGRL3Q9H299 93 aa11.4□□□□□ -0.58
CLN3-216ENST00000565316 IGKV3D-20A0A0C4DH25 116 aa11.39□□□□□ -0.59
CLN3-216ENST00000565316 A0A1W2PRE2 83 aa11.39□□□□□ -0.59
CLN3-216ENST00000565316 PARLQ9H300 379 aa11.39□□□□□ -0.59
CLN3-216ENST00000565316 A8MWV9 139 aa11.38□□□□□ -0.59
CLN3-216ENST00000565316 FAM229AH3BQW9 127 aa11.38□□□□□ -0.59
CLN3-216ENST00000565316 UFSP1Q6NVU6 142 aa11.38□□□□□ -0.59
CLN3-216ENST00000565316 LINC00479Q96M42 142 aa11.38□□□□□ -0.59
CLN3-216ENST00000565316 TM2D2Q9BX73 214 aa11.38□□□□□ -0.59
CLN3-216ENST00000565316 C1QBP02746 253 aa11.37□□□□□ -0.59
CLN3-216ENST00000565316 HAMPP81172 84 aa11.37□□□□□ -0.59
CLN3-216ENST00000565316 Q5BKY6 102 aa11.37□□□□□ -0.59
CLN3-216ENST00000565316 MED28Q9H204 178 aa11.37□□□□□ -0.59
CLN3-216ENST00000565316 TRAV34A0A0B4J273 112 aa11.36□□□□□ -0.59
CLN3-216ENST00000565316 FABP5P3A8MUU1 101 aa11.36□□□□□ -0.59
CLN3-216ENST00000565316 ZNF726P1Q15940 193 aa11.36□□□□□ -0.59
CLN3-216ENST00000565316 Q8N3U1 123 aa11.36□□□□□ -0.59
CLN3-216ENST00000565316 FAM30AQ9NZY2 134 aa11.36□□□□□ -0.59
CLN3-216ENST00000565316 ARL2-SNX15V9GYD0 113 aa11.36□□□□□ -0.59
CLN3-216ENST00000565316 PTTG1O95997 202 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 S100A4P26447 101 aaKnown RBP11.35□□□□□ -0.59
CLN3-216ENST00000565316 ASIPP42127 132 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 DNLZQ5SXM8 178 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 RPL7L1Q6DKI1 246 aaKnown RBP11.35□□□□□ -0.59
CLN3-216ENST00000565316 IL36BQ9NZH7 164 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 Q9UF83 564 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 TRAV8-3A0A0A6YYJ7 113 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 GAGE12JA6NER3 117 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 GIPP09681 153 aaPredicted RBP11.35□□□□□ -0.59
CLN3-216ENST00000565316 GAGE1Q13065 139 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 GAGE4Q13068 117 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 GAGE5Q13069 117 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 WFDC2Q14508 124 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 LGALSLQ3ZCW2 172 aaPredicted RBP11.35□□□□□ -0.59
CLN3-216ENST00000565316 GAGE13Q4V321 117 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 COX8CQ7Z4L0 72 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 JPT2Q9H910 190 aa11.35□□□□□ -0.59
CLN3-216ENST00000565316 A0A087WWC5 75 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 CTXND1A0A1B0GTU2 59 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 RNF222A6NCQ9 220 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 PEX7O00628 323 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 IFNA7P01567 189 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 Q86TA4 180 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 C14orf178Q8N769 122 aaPredicted RBP11.34□□□□□ -0.59
CLN3-216ENST00000565316 INO80EQ8NBZ0 244 aaPredicted RBP11.34□□□□□ -0.59
CLN3-216ENST00000565316 OR2T35Q8NGX2 323 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 SAMD10Q9BYL1 202 aa11.34□□□□□ -0.59
CLN3-216ENST00000565316 NKX6-2Q9C056 277 aaPredicted RBP11.34□□□□□ -0.59
CLN3-216ENST00000565316 BORCS7-ASMTA0A0B4J1R7 106 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 FAM74A7A6NL05 159 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 B4DEV8 164 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 CRIP1P50238 77 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 FGF8P55075 233 aaPredicted RBP11.33□□□□□ -0.6
CLN3-216ENST00000565316 DMRTA1Q5VZB9 504 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 Q6ZSA8 131 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 HIST1H2BAQ96A08 127 aa11.33□□□□□ -0.6
CLN3-216ENST00000565316 KRBOX1C9JBD0 128 aa11.32□□□□□ -0.6
CLN3-216ENST00000565316 UBE2G2P60604 165 aa11.32□□□□□ -0.6
CLN3-216ENST00000565316 TOR2AQ5JU69 321 aa11.32□□□□□ -0.6
CLN3-216ENST00000565316 DAZ4Q86SG3 579 aaKnown RBP11.32□□□□□ -0.6
CLN3-216ENST00000565316 ZC2HC1AQ96GY0 325 aa11.32□□□□□ -0.6
CLN3-216ENST00000565316 BATF3Q9NR55 127 aa11.32□□□□□ -0.6
CLN3-216ENST00000565316 DAZ3Q9NR90 486 aaKnown RBP11.32□□□□□ -0.6
CLN3-216ENST00000565316 H3BVH4 76 aa11.31□□□□□ -0.6
CLN3-216ENST00000565316 RHODO00212 210 aa11.31□□□□□ -0.6
CLN3-216ENST00000565316 ARMS2P0C7Q2 107 aa11.31□□□□□ -0.6
CLN3-216ENST00000565316 ZFP30Q9Y2G7 519 aa11.31□□□□□ -0.6
CLN3-216ENST00000565316 SYT8Q8NBV8 401 aa11.3□□□□□ -0.6
CLN3-216ENST00000565316 COX11Q9Y6N1 276 aa11.3□□□□□ -0.6
CLN3-216ENST00000565316 FXYD6-FXYD2A0A087WZ82 144 aa11.29□□□□□ -0.6
CLN3-216ENST00000565316 SH2D1AO60880 128 aa11.29□□□□□ -0.6
CLN3-216ENST00000565316 FAM162BQ5T6X4 162 aa11.29□□□□□ -0.6
CLN3-216ENST00000565316 NIT1Q86X76 327 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms