RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 IL36BQ9NZH7 164 aa6.89□□□□□ -1.31
CUX1-216ENST00000558469 NACAE9PAV3 2078 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 MUC21A0A0G2JKD1 596 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 MUC21A0A140T8X8 626 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 LOC100996750A0A140TA64 210 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 C7orf77A4D0Y5 90 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 SSTP61278 116 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 RHEBQ15382 184 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 LYZL1Q6UWQ5 148 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 FER1L6-AS1Q8NA97 138 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 IL17DQ8TAD2 202 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 TSKUQ8WUA8 353 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 GTSF1Q8WW33 167 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 C9orf85Q96MD7 179 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 SPXQ9BT56 116 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 KRTAP4-6Q9BYQ5 205 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 RPS10P5Q9NQ39 176 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 PHLDA3Q9Y5J5 127 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 U3KQK5 164 aa6.88□□□□□ -1.31
CUX1-216ENST00000558469 TRGV1A0A0A0MS02 117 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 A0A1W2PPQ1 181 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 M0R2P5 195 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 OR5AL1P0C617 328 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 IGLC6P0CF74 106 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 MED14OSP0DP75 135 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 DAZ2Q13117 558 aaKnown RBP6.87□□□□□ -1.31
CUX1-216ENST00000558469 FAM222AQ5U5X8 452 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 PGLYRP4Q96LB8 373 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 SSBP4Q9BWG4 385 aaPredicted RBP6.87□□□□□ -1.31
CUX1-216ENST00000558469 GFRA4Q9GZZ7 299 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 MRPL16Q9NX20 251 aaKnown RBP6.87□□□□□ -1.31
CUX1-216ENST00000558469 DKK2Q9UBU2 259 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 CELA1Q9UNI1 258 aa6.87□□□□□ -1.31
CUX1-216ENST00000558469 DNAH9Q9NYC9 4486 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 A0A087WWC5 75 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 SMIM27A0A1W2PRY6 76 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 FAM231BA6NCW3 169 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 CXorf65A6NEN9 183 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 LYRM9A8MSI8 78 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 HIGD1CA8MV81 97 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 F2Z2F3 143 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 M0R381 172 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 SNAI2O43623 268 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 SPINK4O60575 86 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 SPART-AS1P0CW21 52 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 DEFB130BP0DP73 79 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 DEFB130AP0DP74 79 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 ZNF876PQ49A33 203 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 Q6ZTI0 123 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 OR10AG1Q8NH19 301 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 CTDSP1Q9GZU7 261 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 SCRT2Q9NQ03 307 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 NAT8BQ9UHF3 227 aa6.86□□□□□ -1.31
CUX1-216ENST00000558469 HUWE1Q7Z6Z7 4374 aaKnown RBP6.85□□□□□ -1.31
CUX1-216ENST00000558469 TGP01266 2768 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 GAGE12BA1L429 117 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 ATP6V1G1O75348 118 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 GAGE7O76087 117 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 GAGE12FP0CL80 117 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 GAGE12GP0CL81 117 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 GAGE12IP0CL82 117 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 CTRLP40313 264 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 FOXA3P55318 350 aaPredicted RBP6.85□□□□□ -1.31
CUX1-216ENST00000558469 FAM3BP58499 235 aaPredicted RBP6.85□□□□□ -1.31
CUX1-216ENST00000558469 DAD1P61803 113 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 LGALS9BQ3B8N2 356 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 SPANXN1Q5VSR9 72 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 ATRAIDQ6UW56 229 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 ZFP82Q8N141 532 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 SYT8Q8NBV8 401 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 NUP35Q8NFH5 326 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 RASL10AQ92737 203 aa6.85□□□□□ -1.31
CUX1-216ENST00000558469 TRGV2A0A075B6R0 118 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 TEX48A0A1B0GUV7 120 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 NTF3P20783 257 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 CACNG7P62955 275 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 TWIST1Q15672 202 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 C11orf45Q8TAV5 145 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 PTH2Q96A98 100 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 BORCS7Q96B45 105 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 TMEM242Q9NWH2 141 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 MSRB1Q9NZV6 116 aa6.84□□□□□ -1.31
CUX1-216ENST00000558469 A0A1B0GUT8 65 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 S100A1P23297 94 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 NANOS2P60321 138 aaKnown RBP6.83□□□□□ -1.32
CUX1-216ENST00000558469 C12orf74Q32Q52 190 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 WDR73Q6P4I2 378 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 LINC00612Q8N6U2 182 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 IMMP2LQ96T52 175 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 JPT2Q9H910 190 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 URGCP-MRPS24S4R325 110 aa6.83□□□□□ -1.32
CUX1-216ENST00000558469 IGHV4-4A0A075B6R2 117 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 NXPH4O95158 308 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 IGHV3-53P01767 116 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 S100PP25815 95 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 PIK3CD-AS1Q5SR53 167 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 CFAP126Q5VTH2 177 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 KCNIP4Q6PIL6 250 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 OR4C5Q8NGB2 326 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 NDUFAF3Q9BU61 184 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms