RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CRYBA4P53673 196 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 SLC48A1Q6P1K1 146 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 FAM24BQ8N5W8 94 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 OR51A4Q8NGJ6 313 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 PRAP1Q96NZ9 151 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 KIAA1549LQ6ZVL6 1849 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 MAP1LC3B2A6NCE7 125 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 TMEM14DPA8MWL7 114 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 MFSD11O43934 449 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 NIPSNAP2O75323 286 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 ADCYAP1P18509 176 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 SPRR2BP35325 72 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 PCBD1P61457 104 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 MORN4Q8NDC4 146 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 CNFNQ9BYD5 112 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 NUBP2Q9Y5Y2 271 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 V9GYV3 84 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 TRPM1Q7Z4N2 1603 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 MYH9P35579 1960 aaKnown RBP-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 VWFP04275 2813 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 DLEC1Q9Y238 1755 aa-0.98□□□□□ -2.57
VPS13C-205ENST00000558088 MXRA5Q9NR99 2828 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 TRGV1A0A0A0MS02 117 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 TRBV27A0A0K0K1C4 114 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 K7EQZ3 153 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 APOC4-APOC2K7ER74 178 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 M0QZK8 103 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 NPFFO15130 113 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 CRYGSP22914 178 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 RPL19P84098 196 aaKnown RBP-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 REEP5Q00765 189 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 INSL4Q14641 139 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 OTOSQ8NHW6 89 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 BRK1Q8WUW1 75 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 BATF3Q9NR55 127 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 RYR3Q15413 4870 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 VIRMAQ69YN4 1812 aaKnown RBP-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 CSPG4Q6UVK1 2322 aa-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 CNOT1A5YKK6 2376 aaKnown RBP-0.99□□□□□ -2.57
VPS13C-205ENST00000558088 HYDINQ4G0P3 5121 aa-1□□□□□ -2.57
VPS13C-205ENST00000558088 IFNA1P01562 189 aa-1□□□□□ -2.57
VPS13C-205ENST00000558088 S100A11P31949 105 aa-1□□□□□ -2.57
VPS13C-205ENST00000558088 MRPS25P82663 173 aaKnown RBP-1□□□□□ -2.57
VPS13C-205ENST00000558088 SSBP1Q04837 148 aaKnown RBP-1□□□□□ -2.57
VPS13C-205ENST00000558088 LXNQ9BS40 222 aa-1□□□□□ -2.57
VPS13C-205ENST00000558088 SSC5DA1L4H1 1573 aa-1□□□□□ -2.57
VPS13C-205ENST00000558088 UBR2Q8IWV8 1755 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 TRDV1A0A1B0GX56 115 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 DEGS1O15121 323 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 TMED2Q15363 201 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 C20orf197Q8N268 126 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 OR4S1Q8NGB4 309 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 COX7B2Q8TF08 81 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 GINS3Q9BRX5 216 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 NPVFQ9HCQ7 196 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 BSNQ9UPA5 3926 aa-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 MAP2P11137 1827 aaKnown RBP-1.01□□□□□ -2.57
VPS13C-205ENST00000558088 USP9YO00507 2555 aaPredicted RBP-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 HBDP02042 147 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 SRP9P49458 86 aaKnown RBP-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 RGS21Q2M5E4 152 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 C2CD3Q4AC94 2353 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 PPRC1Q5VV67 1664 aaKnown RBP-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 PPDPFLQ8WWR9 84 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 IFI27L1Q96BM0 104 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 SCP2D1Q9UJQ7 156 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 TRAPPC8Q9Y2L5 1435 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 LAMTOR2Q9Y2Q5 125 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 BIVM-ERCC5R4GMW8 1640 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 EPG5Q9HCE0 2579 aa-1.02□□□□□ -2.57
VPS13C-205ENST00000558088 PIK3C2AO00443 1686 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 USP54Q70EL1 1684 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 PLB1Q6P1J6 1458 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 AKR1D1P51857 326 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 ERVS71-1P61550 626 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 OR8B8Q15620 311 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 STX19Q8N4C7 294 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 SMIM20Q8N5G0 67 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 SPCS1Q9Y6A9 102 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 TGP01266 2768 aa-1.03□□□□□ -2.57
VPS13C-205ENST00000558088 SPTBN1Q01082 2364 aaKnown RBP-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 TECPR2O15040 1411 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 CXorf51AA0A1B0GTR3 108 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 SLC25A6P12236 298 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 CCL3L1P16619 93 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 GNG3P63215 75 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 HAMPP81172 84 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 OR2T2Q6IF00 324 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 SLC25A26Q70HW3 274 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 TRAPPC2LQ9UL33 140 aa-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 PCF11O94913 1555 aaKnown RBP-1.04□□□□□ -2.58
VPS13C-205ENST00000558088 ITPR3Q14573 2671 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 TRBV10-3A0A0K0K1G6 114 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 PNMA8CA0A1B0GUJ8 204 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 TCTAP57738 103 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 DHRS4L2Q6PKH6 230 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 HRCT1Q6UXD1 115 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 TAS2R8Q9NYW2 309 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 UFC1Q9Y3C8 167 aa-1.05□□□□□ -2.58
VPS13C-205ENST00000558088 RYR1P21817 5038 aa-1.05□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 231.7 ms