RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SYS1-DBNDD2H3BUS1 97 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 K7EMT4 169 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 CCL24O00175 119 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 MED14OSP0DP75 135 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 HNRNPA3P51991 378 aaKnown RBP8.34□□□□□ -1.07
SHMT2-216ENST00000554975 CFHR3Q02985 330 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 PSMG4Q5JS54 123 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 C9orf66Q5T8R8 295 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 ZNF738Q8NE65 137 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 LINC00477Q96M19 166 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 MAP1LC3AQ9H492 121 aa8.34□□□□□ -1.07
SHMT2-216ENST00000554975 ZNF256Q9Y2P7 627 aaPredicted RBP8.34□□□□□ -1.07
SHMT2-216ENST00000554975 TMSB15BA0A087X1C1 80 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 RBMY1BA6NDE4 496 aaKnown RBP8.33□□□□□ -1.08
SHMT2-216ENST00000554975 RBMY1EA6NEQ0 496 aaKnown RBP8.33□□□□□ -1.08
SHMT2-216ENST00000554975 OR4C46A6NHA9 309 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 IGLV1-40P01703 118 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 RBMY1DP0C7P1 496 aaKnown RBP8.33□□□□□ -1.08
SHMT2-216ENST00000554975 IGLC3P0DOY3 106 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 PSMB8P28062 276 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 FAM106AQ4KMX7 169 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 RNF152Q8N8N0 203 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 C4orf3Q8WVX3 66 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 URB1-AS1Q96HZ7 61 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 KLK15Q9H2R5 256 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 DAZ1Q9NQZ3 744 aaKnown RBP8.33□□□□□ -1.08
SHMT2-216ENST00000554975 UFC1Q9Y3C8 167 aa8.33□□□□□ -1.08
SHMT2-216ENST00000554975 TRAV8-2A0A0B4J237 113 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 D6R8Y8 96 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 EREGO14944 169 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 HBDP02042 147 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 CKS2P33552 79 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 ID1P41134 155 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 TWIST1Q15672 202 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 EBLN2Q6P2I7 272 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 SPATA12Q7Z6I5 190 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 MS4A6AQ9H2W1 248 aa8.32□□□□□ -1.08
SHMT2-216ENST00000554975 NXT2Q9NPJ8 142 aaKnown RBP8.32□□□□□ -1.08
SHMT2-216ENST00000554975 HECTD4Q9Y4D8 3996 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 IGHV3OR16-8A0A075B7F1 116 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 TRAV21A0A0B4J279 112 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 IGHV7-4-1A0A0J9YVY3 117 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 HLA-DMBP28068 263 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 MRPL51Q4U2R6 128 aaKnown RBP8.31□□□□□ -1.08
SHMT2-216ENST00000554975 AMN1Q8IY45 258 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 RNF182Q8N6D2 247 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 LINC00469Q8N7U9 141 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 OR11H1Q8NG94 326 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 UBE2E2Q96LR5 201 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 PMCHL2Q9BQD1 86 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 SNHG12Q9BXW3 62 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 AGPAT4-IT1Q9H0P7 198 aa8.31□□□□□ -1.08
SHMT2-216ENST00000554975 MRPS16Q9Y3D3 137 aaKnown RBP8.31□□□□□ -1.08
SHMT2-216ENST00000554975 KMT2AQ03164 3969 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 IGHV4-4A0A075B6R2 117 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 TMEM213A2RRL7 107 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 SOCS3O14543 225 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 SNAI2O43623 268 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 ZNF207O43670 478 aaKnown RBP8.3□□□□□ -1.08
SHMT2-216ENST00000554975 IGHV3-11P01762 117 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 CSN3P07498 182 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 ZNF80P51504 273 aaPredicted RBP8.3□□□□□ -1.08
SHMT2-216ENST00000554975 NUTF2P61970 127 aaKnown RBP8.3□□□□□ -1.08
SHMT2-216ENST00000554975 COL5A1-AS1Q5SY13 56 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 LINC01545Q5VT33 79 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 Q6ZN92 141 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 OR1N2Q8NGR9 330 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 TM2D3Q9BRN9 247 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 ZMAT4Q9H898 229 aa8.3□□□□□ -1.08
SHMT2-216ENST00000554975 PEF1Q9UBV8 284 aaKnown RBP8.3□□□□□ -1.08
SHMT2-216ENST00000554975 IGHV3-66A0A0C4DH42 116 aa8.29□□□□□ -1.08
SHMT2-216ENST00000554975 ERCC8Q13216 396 aa8.29□□□□□ -1.08
SHMT2-216ENST00000554975 GPHB5Q86YW7 130 aa8.29□□□□□ -1.08
SHMT2-216ENST00000554975 MYOZ3Q8TDC0 251 aa8.29□□□□□ -1.08
SHMT2-216ENST00000554975 MRAP2Q96G30 205 aa8.29□□□□□ -1.08
SHMT2-216ENST00000554975 ODF3Q96PU9 254 aa8.29□□□□□ -1.08
SHMT2-216ENST00000554975 IGHV3-49A0A0A0MS15 119 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 A0A1B0GV90 55 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 LINC01546A6NGU7 62 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 PRAC2D3DTV9 90 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 PPP1R17O96001 155 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 LGALS9BQ3B8N2 356 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 IGFL4Q6B9Z1 124 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 LGALS9CQ6DKI2 356 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 APRG1Q8IVJ8 170 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 SIGLEC8Q9NYZ4 499 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 SMPXQ9UHP9 88 aa8.28□□□□□ -1.08
SHMT2-216ENST00000554975 KIAA1109Q2LD37 5005 aa8.27□□□□□ -1.08
SHMT2-216ENST00000554975 DNAH10Q8IVF4 4471 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 IGHV3OR16-13A0A075B7E8 117 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 IGHV3-74A0A0B4J1X5 117 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 LINC01619G3V211 115 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 K7EMI3 77 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 LGALS1P09382 135 aaKnown RBP8.27□□□□□ -1.09
SHMT2-216ENST00000554975 ASIPP42127 132 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 FHL3Q13643 280 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 SPANXN1Q5VSR9 72 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 SLC25A34Q6PIV7 304 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 UNQ9165/PRO28630Q6UXU0 137 aa8.27□□□□□ -1.09
SHMT2-216ENST00000554975 DEFB125Q8N687 156 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms