RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FOXC1Q12948 553 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 UNQ9165/PRO28630Q6UXU0 137 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 LINC00527Q9UJ94 153 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 HRNRQ86YZ3 2850 aaPredicted RBP13.26□□□□□ -0.29
SYNE3-202ENST00000553340 SOCS3O14543 225 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 UBE2D1P51668 147 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 TMEM219Q86XT9 240 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 PLEKHB2Q96CS7 222 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 GNRH2O43555 120 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 DEFB1P60022 68 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 SPTA1P02549 2419 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 NDUFA4O00483 81 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 DUSP14O95147 198 aaKnown RBP13.25□□□□□ -0.29
SYNE3-202ENST00000553340 PAPPA-AS1Q5QFB9 102 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 CFAP126Q5VTH2 177 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 MOB4Q9Y3A3 225 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 IGHV1-69DA0A0B4J2H0 117 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 RNASE3P12724 160 aaKnown RBP13.25□□□□□ -0.29
SYNE3-202ENST00000553340 C19orf54Q5BKX5 351 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 FAM19A4Q96LR4 140 aa13.25□□□□□ -0.29
SYNE3-202ENST00000553340 PTPRQQ9UMZ3 2332 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 A0A1B0GV72 72 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 CRYGDP07320 174 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 HERVK_113P61574 105 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 RPL11P62913 178 aaKnown RBP13.24□□□□□ -0.29
SYNE3-202ENST00000553340 KLHL30-AS1Q8NEE0 82 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 ATP6V0E2Q8NHE4 81 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 C1QTNF4Q9BXJ3 329 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 LOC107984156A0A0G2JMH3 177 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 FOXI1Q12951 378 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 APRG1Q8IVJ8 170 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 ARL17AQ8IVW1 177 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 POM121L12Q8N7R1 296 aa13.24□□□□□ -0.29
SYNE3-202ENST00000553340 TSPAN13O95857 204 aa13.23□□□□□ -0.29
SYNE3-202ENST00000553340 TRBV12-3P01733 135 aa13.23□□□□□ -0.29
SYNE3-202ENST00000553340 C11orf86A6NJI1 115 aa13.23□□□□□ -0.29
SYNE3-202ENST00000553340 TP53TG1Q9Y2A0 90 aa13.23□□□□□ -0.29
SYNE3-202ENST00000553340 TRBV7-9A0A0J9YWB2 115 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 A0A1W2PPR1 153 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 F6UB75 175 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 PSMB2P49721 201 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 CRIP2P52943 208 aaPredicted RBP13.22□□□□□ -0.29
SYNE3-202ENST00000553340 LMO4P61968 165 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 RPL32P62910 135 aaKnown RBP13.22□□□□□ -0.29
SYNE3-202ENST00000553340 LYRM7Q5U5X0 104 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 IGLV4-69A0A075B6H9 119 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 CD7P09564 240 aa13.22□□□□□ -0.29
SYNE3-202ENST00000553340 IGHV4OR15-8A0A075B7B6 117 aa13.21□□□□□ -0.29
SYNE3-202ENST00000553340 A0A087WW49 117 aa13.21□□□□□ -0.29
SYNE3-202ENST00000553340 NXPH4O95158 308 aa13.21□□□□□ -0.29
SYNE3-202ENST00000553340 TSHBP01222 138 aa13.21□□□□□ -0.29
SYNE3-202ENST00000553340 SMCPP49901 116 aaPredicted RBP13.21□□□□□ -0.29
SYNE3-202ENST00000553340 PMVKQ15126 192 aa13.21□□□□□ -0.29
SYNE3-202ENST00000553340 KIF25-AS1Q9Y6Z4 181 aa13.21□□□□□ -0.29
SYNE3-202ENST00000553340 IGIPA6NJ69 53 aa13.21□□□□□ -0.3
SYNE3-202ENST00000553340 UBE2D3P61077 147 aa13.21□□□□□ -0.3
SYNE3-202ENST00000553340 UBE2D2P62837 147 aa13.21□□□□□ -0.3
SYNE3-202ENST00000553340 ZFP2Q6ZN57 461 aa13.21□□□□□ -0.3
SYNE3-202ENST00000553340 BPESC1Q9GZL8 116 aa13.21□□□□□ -0.3
SYNE3-202ENST00000553340 RELNP78509 3460 aa13.21□□□□□ -0.3
SYNE3-202ENST00000553340 A0A0J9YY99 117 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 LINC00315P59091 139 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 SFTA2Q6UW10 78 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 EMP1P54849 157 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 CLEC2AQ6UVW9 174 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 TMEM141Q96I45 108 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 KIR2DL4Q99706 377 aa13.2□□□□□ -0.3
SYNE3-202ENST00000553340 PTPRZ1P23471 2315 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-202ENST00000553340 IGKV3-7A0A075B6H7 116 aa13.19□□□□□ -0.3
SYNE3-202ENST00000553340 NBL1P41271 181 aa13.19□□□□□ -0.3
SYNE3-202ENST00000553340 NDUFA11Q86Y39 141 aa13.19□□□□□ -0.3
SYNE3-202ENST00000553340 UBTD1Q9HAC8 227 aa13.19□□□□□ -0.3
SYNE3-202ENST00000553340 NBASA2RRP1 2371 aa13.19□□□□□ -0.3
SYNE3-202ENST00000553340 SPTBN1Q01082 2364 aaKnown RBP13.19□□□□□ -0.3
SYNE3-202ENST00000553340 VCYO14598 125 aa13.19□□□□□ -0.3
SYNE3-202ENST00000553340 POLR2KP53803 58 aaKnown RBP13.19□□□□□ -0.3
SYNE3-202ENST00000553340 KLRB1Q12918 225 aa13.18□□□□□ -0.3
SYNE3-202ENST00000553340 SYT8Q8NBV8 401 aa13.18□□□□□ -0.3
SYNE3-202ENST00000553340 ZNF418Q8TF45 676 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-202ENST00000553340 FAM159AQ6UWV7 190 aa13.18□□□□□ -0.3
SYNE3-202ENST00000553340 USMG5Q96IX5 58 aa13.18□□□□□ -0.3
SYNE3-202ENST00000553340 TIMM17AQ99595 171 aa13.18□□□□□ -0.3
SYNE3-202ENST00000553340 MUC4Q99102 2169 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 CEP295Q9C0D2 2601 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 IGHV3OR16-10A0A075B7F0 116 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 SUMO4Q6EEV6 95 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 NFE4Q86UQ8 179 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 SVEP1Q4LDE5 3571 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 IGHV3-11P01762 117 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 TCTEX1D4Q5JR98 221 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 TMEM170BQ5T4T1 132 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 RHPN1-AS1Q9BWJ2 59 aa13.17□□□□□ -0.3
SYNE3-202ENST00000553340 F5H697 171 aa13.16□□□□□ -0.3
SYNE3-202ENST00000553340 RPL39P62891 51 aaKnown RBP13.16□□□□□ -0.3
SYNE3-202ENST00000553340 SLC25A29Q8N8R3 303 aa13.16□□□□□ -0.3
SYNE3-202ENST00000553340 DEFB104AQ8WTQ1 72 aa13.16□□□□□ -0.3
SYNE3-202ENST00000553340 ASH1LQ9NR48 2969 aaKnown RBP13.16□□□□□ -0.3
SYNE3-202ENST00000553340 TRBV20-1A0A075B6N2 111 aa13.15□□□□□ -0.3
SYNE3-202ENST00000553340 KLLNB2CW77 178 aa13.15□□□□□ -0.3
SYNE3-202ENST00000553340 IGHV3-30P01768 117 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms