RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 HOXA3O43365 443 aaPredicted RBP12.12□□□□□ -0.47
CUX1-211ENST00000546411 RPL35AP18077 110 aaKnown RBP12.12□□□□□ -0.47
CUX1-211ENST00000546411 LY6G5BQ8NDX9 201 aa12.12□□□□□ -0.47
CUX1-211ENST00000546411 RNF114Q9Y508 228 aa12.12□□□□□ -0.47
CUX1-211ENST00000546411 PLNP26678 52 aa12.11□□□□□ -0.47
CUX1-211ENST00000546411 K7EMI3 77 aa12.11□□□□□ -0.47
CUX1-211ENST00000546411 SMIM2Q9BVW6 85 aa12.11□□□□□ -0.47
CUX1-211ENST00000546411 HTN3P15516 51 aa12.11□□□□□ -0.47
CUX1-211ENST00000546411 CIRBPQ14011 172 aaKnown RBP12.11□□□□□ -0.47
CUX1-211ENST00000546411 DOPEY1Q5JWR5 2465 aa12.11□□□□□ -0.47
CUX1-211ENST00000546411 LGALS9BQ3B8N2 356 aa12.1□□□□□ -0.47
CUX1-211ENST00000546411 LGALS9CQ6DKI2 356 aa12.1□□□□□ -0.47
CUX1-211ENST00000546411 RPL39LQ96EH5 51 aaKnown RBP12.1□□□□□ -0.47
CUX1-211ENST00000546411 TET2Q6N021 2002 aaPredicted RBP12.1□□□□□ -0.47
CUX1-211ENST00000546411 CRYGBP07316 175 aa12.1□□□□□ -0.47
CUX1-211ENST00000546411 BVES-AS1Q5T3Y7 98 aa12.1□□□□□ -0.47
CUX1-211ENST00000546411 SPXQ9BT56 116 aa12.1□□□□□ -0.47
CUX1-211ENST00000546411 MBD6Q96DN6 1003 aa12.1□□□□□ -0.47
CUX1-211ENST00000546411 ADAMTS20P59510 1910 aa12.09□□□□□ -0.47
CUX1-211ENST00000546411 A0A1B0GXF2 115 aa12.09□□□□□ -0.47
CUX1-211ENST00000546411 K7ERJ3 54 aa12.09□□□□□ -0.47
CUX1-211ENST00000546411 TEX29Q8N6K0 151 aa12.09□□□□□ -0.47
CUX1-211ENST00000546411 C10orf105Q8TEF2 133 aa12.09□□□□□ -0.47
CUX1-211ENST00000546411 C2orf70A6NJV1 201 aa12.08□□□□□ -0.48
CUX1-211ENST00000546411 ESDP10768 282 aa12.08□□□□□ -0.48
CUX1-211ENST00000546411 MRPL52Q86TS9 123 aaKnown RBP12.08□□□□□ -0.48
CUX1-211ENST00000546411 CCDC140Q96MF4 163 aa12.08□□□□□ -0.48
CUX1-211ENST00000546411 IGHV3-38A0A0C4DH36 116 aa12.08□□□□□ -0.48
CUX1-211ENST00000546411 ODF3BA8MYP8 253 aa12.08□□□□□ -0.48
CUX1-211ENST00000546411 FRYQ5TBA9 3013 aa12.07□□□□□ -0.48
CUX1-211ENST00000546411 CDKN1BP46527 198 aa12.07□□□□□ -0.48
CUX1-211ENST00000546411 GATA3P23771 443 aa12.07□□□□□ -0.48
CUX1-211ENST00000546411 RNASE13Q5GAN3 156 aaKnown RBP12.07□□□□□ -0.48
CUX1-211ENST00000546411 Q71RC1 249 aaPredicted RBP12.07□□□□□ -0.48
CUX1-211ENST00000546411 LY6LH3BQJ8 138 aa12.07□□□□□ -0.48
CUX1-211ENST00000546411 CRIP1P50238 77 aa12.07□□□□□ -0.48
CUX1-211ENST00000546411 TRGV4A0A0C4DH28 118 aa12.06□□□□□ -0.48
CUX1-211ENST00000546411 VWC2LB2RUY7 222 aa12.06□□□□□ -0.48
CUX1-211ENST00000546411 CFHR3Q02985 330 aa12.06□□□□□ -0.48
CUX1-211ENST00000546411 ZNF625Q96I27 306 aaPredicted RBP12.06□□□□□ -0.48
CUX1-211ENST00000546411 IGHV1OR15-1A0A075B7D0 117 aa12.06□□□□□ -0.48
CUX1-211ENST00000546411 HOXD3P31249 432 aaPredicted RBP12.06□□□□□ -0.48
CUX1-211ENST00000546411 OR13C6PQ8NH95 151 aa12.06□□□□□ -0.48
CUX1-211ENST00000546411 PGPEP1Q9NXJ5 209 aa12.06□□□□□ -0.48
CUX1-211ENST00000546411 BOD1L1Q8NFC6 3051 aa12.05□□□□□ -0.48
CUX1-211ENST00000546411 IGF1P05019 195 aa12.05□□□□□ -0.48
CUX1-211ENST00000546411 LINC01559Q495D7 138 aa12.05□□□□□ -0.48
CUX1-211ENST00000546411 PRADC1Q9BSG0 188 aa12.05□□□□□ -0.48
CUX1-211ENST00000546411 TRAV13-1A0A0B4J241 112 aa12.04□□□□□ -0.48
CUX1-211ENST00000546411 PRSS47A8MTI9 375 aa12.04□□□□□ -0.48
CUX1-211ENST00000546411 RNASE1P07998 156 aaKnown RBP12.04□□□□□ -0.48
CUX1-211ENST00000546411 TMEM101Q96IK0 257 aa12.04□□□□□ -0.48
CUX1-211ENST00000546411 LINC01545Q5VT33 79 aa12.04□□□□□ -0.48
CUX1-211ENST00000546411 C16orf54Q6UWD8 224 aa12.04□□□□□ -0.48
CUX1-211ENST00000546411 F8VRH5 84 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 MYCNOSP40205 109 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 ZNF415Q09FC8 603 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 PCSK5Q92824 1860 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 LINC00310P59036 64 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 GAGE13Q4V321 117 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 OR5A1Q8NGJ0 315 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 ZNF292O60281 2723 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 SLURP1P55000 103 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 SMAGPQ0VAQ4 97 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 CHCHD5Q9BSY4 110 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 JPT2Q9H910 190 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 AMTNQ6UX39 209 aa12.03□□□□□ -0.48
CUX1-211ENST00000546411 H3BRM9 83 aa12.02□□□□□ -0.48
CUX1-211ENST00000546411 CCL25O15444 150 aa12.02□□□□□ -0.48
CUX1-211ENST00000546411 CST9LQ9H4G1 147 aa12.02□□□□□ -0.49
CUX1-211ENST00000546411 PRSS29PA6NIE9 313 aa12.02□□□□□ -0.49
CUX1-211ENST00000546411 A0A1W2PPR1 153 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 RBAKDNA6NC62 111 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 ADARB2-AS1A8MUL3 147 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 APRG1Q8IVJ8 170 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 TNFRSF13BO14836 293 aaPredicted RBP12.01□□□□□ -0.49
CUX1-211ENST00000546411 IGLV2-11P01706 119 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 HIST2H2BDQ6DRA6 164 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 VPREB3Q9UKI3 123 aa12.01□□□□□ -0.49
CUX1-211ENST00000546411 DEFB130BP0DP73 79 aa12□□□□□ -0.49
CUX1-211ENST00000546411 DEFB130AP0DP74 79 aa12□□□□□ -0.49
CUX1-211ENST00000546411 C11orf71Q6IPW1 123 aa12□□□□□ -0.49
CUX1-211ENST00000546411 LINC01619G3V211 115 aa12□□□□□ -0.49
CUX1-211ENST00000546411 ANKRD17O75179 2603 aaKnown RBP12□□□□□ -0.49
CUX1-211ENST00000546411 INSP01308 110 aa12□□□□□ -0.49
CUX1-211ENST00000546411 C11orf68Q9H3H3 251 aaKnown RBP12□□□□□ -0.49
CUX1-211ENST00000546411 SPTBN5Q9NRC6 3674 aaKnown RBP12□□□□□ -0.49
CUX1-211ENST00000546411 CTRLP40313 264 aa12□□□□□ -0.49
CUX1-211ENST00000546411 TRPT1Q86TN4 253 aaKnown RBP12□□□□□ -0.49
CUX1-211ENST00000546411 SMAD5-AS1Q9Y6J3 95 aa12□□□□□ -0.49
CUX1-211ENST00000546411 PMVKQ15126 192 aa11.99□□□□□ -0.49
CUX1-211ENST00000546411 C10orf99Q6UWK7 81 aa11.99□□□□□ -0.49
CUX1-211ENST00000546411 IGHG2P01859 326 aa11.99□□□□□ -0.49
CUX1-211ENST00000546411 RPL36AP83881 106 aaKnown RBP11.99□□□□□ -0.49
CUX1-211ENST00000546411 ETDBQ3ZM63 59 aa11.99□□□□□ -0.49
CUX1-211ENST00000546411 RPL36ALQ969Q0 106 aaKnown RBP11.99□□□□□ -0.49
CUX1-211ENST00000546411 C9orf118A6NHY6 69 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 LINC01549A6NIU2 74 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 SNCGO76070 127 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 HLA-DRB4P13762 266 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms