RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 IFI27L1Q96BM0 104 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 PDZD2O15018 2839 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 SETD2Q9BYW2 2564 aaPredicted RBP12.2□□□□□ -0.46
COL4A1-204ENST00000543140 TRAV12-2A0A075B6T6 113 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 TCTEX1D4Q5JR98 221 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 Q8N2B8 174 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 ST20Q9HBF5 79 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 FAM159AQ6UWV7 190 aa12.19□□□□□ -0.46
COL4A1-204ENST00000543140 ADAMTSL5Q6ZMM2 481 aa12.19□□□□□ -0.46
COL4A1-204ENST00000543140 MRPL52Q86TS9 123 aaKnown RBP12.19□□□□□ -0.46
COL4A1-204ENST00000543140 STPG4Q8N801 248 aa12.19□□□□□ -0.46
COL4A1-204ENST00000543140 KMT2BQ9UMN6 2715 aaPredicted RBP12.19□□□□□ -0.46
COL4A1-204ENST00000543140 WNK1Q9H4A3 2382 aa12.19□□□□□ -0.46
COL4A1-204ENST00000543140 A0A0J9YX75 114 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 DLEU1O43261 78 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 Q8N8P6 123 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 OR11H1Q8NG94 326 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 GOLT1BQ9Y3E0 138 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 IGLV2-18A0A075B6J9 118 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 MGPP08493 103 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 PLA2G2AP14555 144 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 FOSL1P15407 271 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 FCER1GP30273 86 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 TCTAP57738 103 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 TMEM158Q8WZ71 300 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 SCRT2Q9NQ03 307 aa12.18□□□□□ -0.46
COL4A1-204ENST00000543140 LINC01546A6NGU7 62 aa12.17□□□□□ -0.46
COL4A1-204ENST00000543140 CD7P09564 240 aa12.17□□□□□ -0.46
COL4A1-204ENST00000543140 HINT1P49773 126 aaPredicted RBP12.17□□□□□ -0.46
COL4A1-204ENST00000543140 SPINK13Q1W4C9 94 aa12.17□□□□□ -0.46
COL4A1-204ENST00000543140 MTORP42345 2549 aa12.17□□□□□ -0.46
COL4A1-204ENST00000543140 C7orf71A4D174 169 aa12.16□□□□□ -0.46
COL4A1-204ENST00000543140 DPH3P1Q9H4G8 78 aa12.16□□□□□ -0.46
COL4A1-204ENST00000543140 J3QKU1 62 aa12.16□□□□□ -0.46
COL4A1-204ENST00000543140 DPF1Q92782 380 aa12.16□□□□□ -0.46
COL4A1-204ENST00000543140 RPL39LQ96EH5 51 aaKnown RBP12.16□□□□□ -0.46
COL4A1-204ENST00000543140 MRAP2Q96G30 205 aa12.16□□□□□ -0.46
COL4A1-204ENST00000543140 MRPS16Q9Y3D3 137 aaKnown RBP12.16□□□□□ -0.46
COL4A1-204ENST00000543140 CUBNO60494 3623 aa12.16□□□□□ -0.46
COL4A1-204ENST00000543140 DNAJC9-AS1A6NH13 148 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 C11orf44Q8N8P7 122 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 LINC01619G3V211 115 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 CD5LO43866 347 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 LGALS9BQ3B8N2 356 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 LGALS9CQ6DKI2 356 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 SLC25A34Q6PIV7 304 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 Q6ZSV7 163 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 JPT2Q9H910 190 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 DKK2Q9UBU2 259 aa12.15□□□□□ -0.46
COL4A1-204ENST00000543140 MED14OSP0DP75 135 aa12.14□□□□□ -0.47
COL4A1-204ENST00000543140 KLHL30-AS1Q8NEE0 82 aa12.14□□□□□ -0.47
COL4A1-204ENST00000543140 RASL10AQ92737 203 aa12.14□□□□□ -0.47
COL4A1-204ENST00000543140 LAGE3Q14657 143 aa12.14□□□□□ -0.47
COL4A1-204ENST00000543140 OR1N2Q8NGR9 330 aa12.14□□□□□ -0.47
COL4A1-204ENST00000543140 AP1S3Q96PC3 154 aa12.14□□□□□ -0.47
COL4A1-204ENST00000543140 C4orf3Q8WVX3 66 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 ESM1Q9NQ30 184 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 PRSS1P07477 247 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 SMIM17P0DL12 118 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 CDKN1BP46527 198 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 ANKRD39Q53RE8 183 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 COL5A1-AS1Q5SY13 56 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 ERASQ7Z444 233 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 DLX4Q92988 240 aaPredicted RBP12.13□□□□□ -0.47
COL4A1-204ENST00000543140 UNC79Q9P2D8 2635 aa12.13□□□□□ -0.47
COL4A1-204ENST00000543140 KNCNA6PVL3 124 aa12.12□□□□□ -0.47
COL4A1-204ENST00000543140 PRSS47A8MTI9 375 aa12.12□□□□□ -0.47
COL4A1-204ENST00000543140 OR9G4Q8NGQ1 327 aa12.12□□□□□ -0.47
COL4A1-204ENST00000543140 MDFICQ9P1T7 246 aa12.12□□□□□ -0.47
COL4A1-204ENST00000543140 A0A087WWL8 130 aa12.12□□□□□ -0.47
COL4A1-204ENST00000543140 SMIM2Q9BVW6 85 aa12.12□□□□□ -0.47
COL4A1-204ENST00000543140 DEFB131AP59861 70 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 SUMO2P61956 95 aaKnown RBP12.11□□□□□ -0.47
COL4A1-204ENST00000543140 TMEM61Q8N0U2 210 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 ODF3Q96PU9 254 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 A0A1W2PRX2 142 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 Q8N1Y9 231 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 TMEM86BQ8N661 226 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 DEFB125Q8N687 156 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 YAE1D1Q9NRH1 226 aa12.11□□□□□ -0.47
COL4A1-204ENST00000543140 NXPH4O95158 308 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 NUDT3O95989 172 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 FOXI2Q6ZQN5 318 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 DUSP14O95147 198 aaKnown RBP12.1□□□□□ -0.47
COL4A1-204ENST00000543140 KRTAP1-1Q07627 177 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 MPV17L2Q567V2 206 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 DEFB104AQ8WTQ1 72 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 FOXC2Q99958 501 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 PEMTQ9UBM1 199 aa12.1□□□□□ -0.47
COL4A1-204ENST00000543140 AKAP9Q99996 3911 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 IGHV3-16A0A0C4DH30 117 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 AMTNQ6UX39 209 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 KIF25-AS1Q9Y6Z4 181 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 FASNP49327 2511 aaKnown RBP12.09□□□□□ -0.47
COL4A1-204ENST00000543140 COX8AP10176 69 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 HTN1P15515 57 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 LINC00315P59091 139 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 ODF1Q14990 250 aa12.09□□□□□ -0.47
COL4A1-204ENST00000543140 F5H697 171 aa12.08□□□□□ -0.48
COL4A1-204ENST00000543140 FAM74A4Q5TZK3 123 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms