RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CCDC179H3BU77 68 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 C15orf32Q32M92 178 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 NDUFA11Q86Y39 141 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 TOMM6Q96B49 74 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 ADGRG4Q8IZF6 3080 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 A0A0G2JNJ9 132 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 Q6ZS92 163 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 BEX4Q9NWD9 120 aaPredicted RBP9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 Q9UFV3 132 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 IGHV7-4-1A0A0J9YVY3 117 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 E7EQL1 145 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 UBE2D1P51668 147 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 SLC25A20O43772 301 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 CLEC19AQ6UXS0 136 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 FAM57AQ8TBR7 257 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 RASL10AQ92737 203 aa9.85□□□□□ -0.83
SFSWAP-209ENST00000540469 DPH3P1Q9H4G8 78 aa9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 PTPRQQ9UMZ3 2332 aa9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 DUSP14O95147 198 aaKnown RBP9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 BRI3O95415 125 aa9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 LGALS3P17931 250 aaKnown RBP9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 PRO1854Q9UHT4 67 aa9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 AKAP6Q13023 2319 aa9.84□□□□□ -0.83
SFSWAP-209ENST00000540469 F5H697 171 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 BUB3O43684 328 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 UBE2D3P61077 147 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 UBE2D2P62837 147 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 RPL11P62913 178 aaKnown RBP9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 METTL26Q96S19 204 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 C11orf86A6NJI1 115 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 RPL32P62910 135 aaKnown RBP9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 C10orf126Q8N4M7 172 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 RBAKDNA6NC62 111 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 LY6HO94772 140 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 ID1P41134 155 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 ASIPP42127 132 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 TIMD4Q96H15 378 aa9.83□□□□□ -0.84
SFSWAP-209ENST00000540469 IGKV3-7A0A075B6H7 116 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 IGHV4-39P01824 125 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 TP53TG1Q9Y2A0 90 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 TRAV2A0A0B4J234 112 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 LY6LH3BQJ8 138 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 NPBQ8NG41 125 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 A0A0J9YY99 117 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 CD3EP07766 207 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 CD7P09564 240 aa9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 TRPT1Q86TN4 253 aaKnown RBP9.82□□□□□ -0.84
SFSWAP-209ENST00000540469 IGHV3-64A0A075B6Q5 118 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 CFC1BP0CG36 223 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 CFC1P0CG37 223 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 Q6ZS46 218 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 NTN5Q8WTR8 489 aaPredicted RBP9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 PAPPA-AS1Q5QFB9 102 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 B9A039 149 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 AJUBAQ96IF1 538 aa9.81□□□□□ -0.84
SFSWAP-209ENST00000540469 GAGE12JA6NER3 117 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 GAGE7O76087 117 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 IGF1P05019 195 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 GAGE12FP0CL80 117 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 GAGE12GP0CL81 117 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 GAGE12IP0CL82 117 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 GAGE4Q13068 117 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 MSRB2Q9Y3D2 182 aa9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 ANKHD1Q8IWZ3 2542 aaKnown RBP9.8□□□□□ -0.84
SFSWAP-209ENST00000540469 OR10J6PQ8NGY7 276 aa9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 RNASE4P34096 147 aaKnown RBP9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 ZNF672Q499Z4 452 aaPredicted RBP9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 TRAV21A0A0B4J279 112 aa9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 A4D1N5 150 aa9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 TMEM95Q3KNT9 176 aa9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 PSMG3-AS1Q96PY0 264 aa9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 CACNA1AO00555 2505 aa9.79□□□□□ -0.84
SFSWAP-209ENST00000540469 TRAV4A0A0B4J268 109 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 IFITM1P13164 125 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 RPL39P62891 51 aaKnown RBP9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 PMVKQ15126 192 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 PRR9Q5T870 116 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 TRAV8-4A0A0B4J246 113 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 NHLRC4P0CG21 123 aaPredicted RBP9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 COX6B1P14854 86 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 CRIP2P52943 208 aaPredicted RBP9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 NDUFV3P56181 108 aaKnown RBP9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 EPG5Q9HCE0 2579 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 J3QQQ9 107 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 CRLF1O75462 422 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 PPP1R17O96001 155 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 DEFB1P60022 68 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 CITED1Q99966 193 aa9.78□□□□□ -0.84
SFSWAP-209ENST00000540469 IGHV7-81A0A0B4J1V7 117 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 IGHV3-30P01768 117 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 PRSS2P07478 247 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 IGHV3-30-5P0DP03 117 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 NBL1P41271 181 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 FAM74A4Q5TZK3 123 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 VMO1Q7Z5L0 202 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 ZFAND3Q9H8U3 227 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 ZNF256Q9Y2P7 627 aaPredicted RBP9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 FAM159AQ6UWV7 190 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms